HsaALTD0004740-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:23396]
Coordinates
chr9:131700036-131702776:+
Coord C1 exon
chr9:131700036-131700057
Coord A exon
NA
Coord C2 exon
chr9:131702648-131702776
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCCGTGGGCCTGCTTAGTCT
3' ss Score
3.41
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGTGAAG
Seq A exon
NA
Seq C2 exon
TCTCCCCTCATCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCGTGTGGATCGCAGTGGAGGATGCCACGCTGGAGAACGGCTGTCTCTGGTTCATCCCTGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287-11-19,13-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(3.1=100)
A:
NA
C2:
PF057218=PhyH=PD(13.3=18.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACTTTGGCGGTGAAG
R:
TGTGGGAGCCAGGGATGAAC
Band lengths:
147-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)