MmuALTD1035837-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30277623-30279526:+
Coord C1 exon
chr2:30277623-30277644
Coord A exon
NA
Coord C2 exon
chr2:30279395-30279526
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCACCAACTTCTCTTCCAGAGG
3' ss Score
6.41
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGCGAAG
Seq A exon
NA
Seq C2 exon
AGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTCTGGTATGTCTGAAGACAGCTACAGTGTACTTATATAAATAAAATATTTGTTAAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-14-16,16-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
NA
C2:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types