HsaALTD0004784-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase like 1 [Source:HGNC Symbol;Acc:HGNC:28711]
Coordinates
chr9:127925107-127925979:-
Coord C1 exon
chr9:127925958-127925979
Coord A exon
chr9:127925867-127925957
Coord C2 exon
chr9:127925107-127925260
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GGGCACTGATGCTCCGGCAGGGC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTATGACATCAAAGGCTGCGAG
Seq A exon
GTGAGCCGCTGGGTGGATCCCGCCCCTGAGGGCAGCCCCCTTGTTCTGGTGCTGAAGGACCTCAACTTTCAGGGCAAGACCATCAACCTGG
Seq C2 exon
GGCCCCAGCGGAGCTGGTTCCTCCGCCAGATGGAACTGGATACCACCTTCCTCCGGGAGCTCAACGTGCTGGATTACAGCCTCCTGATAGCCTTCCAACGTCTCCACGAGGATGAGAGGGGCCCGGGCAGCAGCCTCATCTTCCGCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-12-18,13-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(20.0=100)
A:
NA
C2:
PF0150413=PIP5K=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGACATCAAAGGCTGCGA
R:
CGTGCGGAAGATGAGGCTG
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains