HsaALTD0004784-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130687386-130688258:-
Coord C1 exon
chr9:130688237-130688258
Coord A exon
chr9:130688146-130688236
Coord C2 exon
chr9:130687386-130687539
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GGGCACTGATGCTCCGGCAGGGC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTATGACATCAAAGGCTGCGAG
Seq A exon
GTGAGCCGCTGGGTGGATCCCGCCCCTGAGGGCAGCCCCCTTGTTCTGGTGCTGAAGGACCTCAACTTTCAGGGCAAGACCATCAACCTGG
Seq C2 exon
GGCCCCAGCGGAGCTGGTTCCTCCGCCAGATGGAACTGGATACCACCTTCCTCCGGGAGCTCAACGTGCTGGATTACAGCCTCCTGATAGCCTTCCAACGTCTCCACGAGGATGAGAGGGGCCCGGGCAGCAGCCTCATCTTCCGCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-10-17,11-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(20.0=100)
A:
NA
C2:
PF0150413=PIP5K=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGACATCAAAGGCTGCGA
R:
CGTGCGGAAGATGAGGCTG
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)