HsaALTA0006327-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130687483-130688258:-
Coord C1 exon
chr9:130688146-130688258
Coord A exon
chr9:130687511-130687539
Coord C2 exon
chr9:130687483-130687510
Length
29 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GGGCACTGATGCTCCGGCAGGGC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTATGACATCAAAGGCTGCGAGGTGAGCCGCTGGGTGGATCCCGCCCCTGAGGGCAGCCCCCTTGTTCTGGTGCTGAAGGACCTCAACTTTCAGGGCAAGACCATCAACCTGG
Seq A exon
GGCCCCAGCGGAGCTGGTTCCTCCGCCAG
Seq C2 exon
ATGGAACTGGATACCACCTTCCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-11-18,11-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(20.0=100)
A:
NA
C2:
PF0150413=PIP5K=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAAGGCTGCGAGGTGAG
R:
GGAAGGTGGTATCCAGTTCCA
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)