MmuALTA1035162-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000046854 | Pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:MGI Symbol;Acc:MGI:2448520]
Coordinates
chr2:32579941-32580429:+
Coord C1 exon
chr2:32579941-32580053
Coord A exon
chr2:32580279-32580307
Coord C2 exon
chr2:32580308-32580429
Length
29 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AGTTGTGGTGGTCCCCACAGGAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTATGACATCAAGGGCTGCAACATAAGCCGCTGGGTAGATCCAGCCCCTGAGGGCAGCCCCCTTGTCTTGGTGCTGAAGGACCTCAACTTTCAAGAAAAGACCATGAGATTGG
Seq A exon
GAGCCCAGCGGAGCTGGTTCCTCCGGCAG
Seq C2 exon
ATGGAGCTAGACACCGCCTTCCTGCGGGAGGTGAATGTACTGGATTACAGCCTCCTGGTGGCCATCCAGTTTCTCCACGAAGACGAGAAGGGCATTCACCACTCTGTCTTCAGCACATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046854-15-15,15-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(14.0=100)
A:
NA
C2:
PF0150413=PIP5K=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGTCTTGGTGCTGAAGG
R:
ACCAGGAGGCTGTAATCCAGT
Band lengths:
113-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types