HsaALTD0004952-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000130714 | POMT1
Description
protein-O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:9202]
Coordinates
chr9:134385290-134385802:+
Coord C1 exon
chr9:134385290-134385383
Coord A exon
chr9:134385384-134385449
Coord C2 exon
chr9:134385647-134385802
Length
66 bp
Sequences
Splice sites
5' ss Seq
GGGGTACTT
5' ss Score
3.69
3' ss Seq
TTTCTTTGAATCTCTGGCAGGTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
CATCAAGTACATGGGTGTGTTCACGTACGTGCTCGTGCTGGGTGTTGCAGCTGTCCATGCCTGGCACCTGCTTGGAGACCAGACTTTGTCCAAT
Seq A exon
GTAGGTGCTGATGTCCAGTGCTGCATGAGGCCGGCCTGTATGGGGCAGATGCAGATGTCACAGGGG
Seq C2 exon
GTCTGTGTGTTCTGTCACTTGCTCGCCCGAGCAGTGGCTTTGCTGGTCATCCCGGTCGTCCTGTACTTACTGTTCTTCTACGTCCACTTGATTCTAGTCTTCCGCTCTGGGCCCCACGACCAAATCATGTCCAGTGCCTTCCAGGCCAGCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714-9-9,10-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.6=100)
A:
NA
C2:
PF0236613=PMT=PD(15.5=63.5)
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTTGGAGACCAGACTT
R:
CTGGAAGGCACTGGACATGAT
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)