HsaALTD0004952-2/6 @ hg38
Alternative 5'ss
Gene
ENSG00000130714 | POMT1
Description
protein O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:9202]
Coordinates
chr9:131509903-131510415:+
Coord C1 exon
chr9:131509903-131509926
Coord A exon
chr9:131509927-131509996
Coord C2 exon
chr9:131510260-131510415
Length
70 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
TTTCTTTGAATCTCTGGCAGGTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
CATCAAGTACATGGGTGTGTTCAC
Seq A exon
GTACGTGCTCGTGCTGGGTGTTGCAGCTGTCCATGCCTGGCACCTGCTTGGAGACCAGACTTTGTCCAAT
Seq C2 exon
GTCTGTGTGTTCTGTCACTTGCTCGCCCGAGCAGTGGCTTTGCTGGTCATCCCGGTCGTCCTGTACTTACTGTTCTTCTACGTCCACTTGATTCTAGTCTTCCGCTCTGGGCCCCACGACCAAATCATGTCCAGTGCCTTCCAGGCCAGCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714-13-12,14-12,15-12,16-12,17-12,18-12-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.6=100)
A:
NA
C2:
PF0236613=PMT=PD(15.5=63.5)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTACATGGGTGTGTTCAC
R:
CCTGGAAGGCACTGGACATGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains