DreALTD0014420-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50469865-50471339:+
Coord C1 exon
chr5:50469865-50469878
Coord A exon
chr5:50469879-50469958
Coord C2 exon
chr5:50471184-50471339
Length
80 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TTTGTCATTTGTCTGAAAAGGGC
3' ss Score
6.69
Exon sequences
Seq C1 exon
AGTAAAGTACATGG
Seq A exon
GTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCAT
Seq C2 exon
GGCAAAGTAATGTTCCAGGTATTGGTTCGCTTCCTGGCACTCGTGGTGCTACCTGTCATCATGTACCTTGGGTTTTTCTACATTCATCTGACCTTGCTATATCGCAGTGGACCTCATGACCAGATGATGAGCAGTGCCTTTCAAGCAAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(12.7=100)
A:
NA
C2:
PF0236613=PMT=PD(13.5=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]