HsaALTD0004977-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169584390-169603694:+
Coord C1 exon
chr2:169584390-169584490
Coord A exon
chr2:169584491-169584497
Coord C2 exon
chr2:169603642-169603694
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
CTCTCATTTTTGTTTTCTAGGAG
3' ss Score
11.64
Exon sequences
Seq C1 exon
AGGGAGGCGGTTAGCGGGCTTTAGCGCCTTTTCTGGCGGCGGTAGATTTGAAGCGCTTCAAAGGACCGGACCCAGAGAAGAGGAAAACTCTACCGGTGCAG
Seq A exon
GTAAGTG
Seq C2 exon
GAGCACAGGGATCAGTTGTCCTTGTTTTTTTTTGGTCTTTTCTTCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-0-5,1-5,2-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PU(12.7=45.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCTGGCGGCGGTAGATT
R:
AGGACAACTGATCCCTGTGCT
Band lengths:
96-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains