HsaALTD0005020-1/3 @ hg19
Alternative 5'ss
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:9326]
Coordinates
chr6:32121999-32122554:+
Coord C1 exon
chr6:32121999-32122023
Coord A exon
NA
Coord C2 exon
chr6:32122364-32122554
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CCTTATCACCCCTTTCTCAGGCG
3' ss Score
7.44
Exon sequences
Seq C1 exon
AGCGAGGCCTACGGACCCAGGCCAG
Seq A exon
NA
Seq C2 exon
GCGGGAGCATGCTGGGGCTCTGCGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCTGCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-1-10,2-10,3-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0408311=Abhydro_lipase=WD(100=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTACGGACCCAGG
R:
TCATTGATGTATTCCAGCAGGTG
Band lengths:
212-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)