HsaEX0049845 @ hg19
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:9326]
Coordinates
chr6:32121218-32122554:+
Coord C1 exon
chr6:32121218-32121413
Coord A exon
chr6:32121776-32122181
Coord C2 exon
chr6:32122364-32122554
Length
406 bp
Sequences
Splice sites
3' ss Seq
TCCGCCTGTTTCCTCCCCAGCAC
3' ss Score
9.56
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GACTGGTCGAAATTACGCGGGCATGAGTCAGCGCATCCCTACGCGCCCTCCGCCCCTTGAGGGTGGGTCGCTTATAGGGAGGGGAGTAGAGTAGGGCAGGAGAAACTGGGCCAGGCTGCACTTAGCTCAAGGGGCCTCGAGGACTCTCTGCGTCTCTGGAGACAAGGGCACTACACGCACTTCAGAATGAAGAGTT
Seq A exon
CACCTAGGGCGCAATGGAATATTCCATTGCCCCTCCTGTCCTGGGTCTGTGTTGCGGGGAACGCTCGCGCGGTTGCCAGAGAAAGCCCCGGACGTGACGGATTTGCGCGACCCCAAGCAGCCCGCCCTTCCCCCTCCCATCCGTCATTCCCCTGCGCTCTCTTTCCTCACCCTTCCCCCCGCCACCGTGGGTTCCAGACTTGGGATAAGTAAACAGCGGGTGGAGCGAGGCCTACGGACCCAGGCCAGGTGGGAGTCTGCACTCTTCAAGGGGCCTGGGCTGCTGCTCACGGGTATTAAAGAACTCCGCGTTGTTCATGGCTGAGGCGATGCATTAGGAAGATCCTGGACCTAGAGAACAAGTCCCCCGAACGCTGAGTTGGAGGCGGGACTTCGGGTGCGCGTTG
Seq C2 exon
GCGGGAGCATGCTGGGGCTCTGCGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCTGCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'0-10,'0-1,3-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.514 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0408311=Abhydro_lipase=WD(100=52.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAATTACGCGGGCATGAG
R:
GAGCTGTCGAAGAGCCCATG
Band lengths:
344-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)