MmuEX1020747 @ mm10
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34626805-34628510:-
Coord C1 exon
chr17:34628118-34628510
Coord A exon
chr17:34627325-34627581
Coord C2 exon
chr17:34626805-34626995
Length
257 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTATTTCCTCCCCAGTTC
3' ss Score
10.1
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AAATTTTTACCCACGGCCTCATACCGGTGGTTCTGGTTTTTCAACCGTGCATGGATCAGAGGGAACCTTGGACCCATCCCTCCCACACCATCTTCAATACACGCTTCTGGTTTTATTAAGTTCAGATTAAACAAAGTCCCTGAGTACAGGCCTTGAAGCTCAGAAACCCTGCAAACTTATTTAATTGCTAAGTAAAAGCACTGACGGATAAAGGCTATTCCCTGGCACTCCGGCGCGCCGTAGGGGTCACGGGTAGGCCGAGTGGTGCCAGCGCCCGCAGCGGGGAGGAAGTCTGCCTGCACTGGCAGGGTTTGTGTCGCCAGCAGCCCGCAGGGATCTGAGGAGCAGTTTGTCGGGGTCGCTCAGGATTGAAAGACTGGTGGAAATCCTGTG
Seq A exon
TTCTTTGGGTGCAATGGAATGTTCCATTGCCCCTCCGGTCCGCTGTCCGCGTTGCAGGGGACGCTCGCCCTGTTGCCAGGGAAAGTCCCGGACGTGACGGCTTTGCGCGACCCCGAGCAGCACCCCCCCCCCCCCCCCCGCGCCCCGTCCGTCATCCCACTGCGCGCTCTCCTTGTCCCCCTATCCCCGTATCCGGTGGATTACAGACTAGGTACAAGTAAACAGCTGGCGGAACGAAGCCTCCAGACACAGACCAG
Seq C2 exon
GTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCGTTCCTGCCGCTGCTGATGCCCGCAGCCCCCGCAGCCCACCGCGGGTCCTACAAGCCCGTGATCGTGGTGCACGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACTATATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0208910=Palm_thioest=PU(10.2=44.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGAAGCTCAGAAACCCT
R:
CAGGAGAAGCAAAGCCCAAGC
Band lengths:
306-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types