HsaALTD0005087-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000007038 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:9485]
Coordinates
chr16:2870956-2871720:+
Coord C1 exon
chr16:2870956-2871068
Coord A exon
chr16:2871069-2871110
Coord C2 exon
chr16:2871367-2871720
Length
42 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TCAGCCCCGCTGCTCCCCAGGGT
3' ss Score
5.3
Exon sequences
Seq C1 exon
CACTGCCATCTCCCCACACCCTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATG
Seq A exon
GTTTGTGCTGGCAATGCCCAAGGCGGGAAGGATGCCTGCTTC
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGCCTGTAACAAGAATGGACTGTGGTATCAGATTGGAGTCGTGAGCTGGGGAGTGGGCTGTGGTCGGCCCAATCGGCCCGGTGTCTACACCAATATCAGCCACCACTTTGAGTGGATCCAGAAGCTGATGGCCCAGAGTGGCATGTCCCAGCCAGACCCCTCCTGGCCGCTACTCTTTTTCCCTCTTCTCTGGGCTCTCCCACTCCTGGGGCCGGTCTGAGCCTACCTGAGCCCATGCAGCCTGGGGCCACTGCCAAGTCAGGCCCTGGTTCTCTTCTGTCTTGTTTGGTAATAAACACATTCCAGTTGATGCCTTGCAGGGCATTCTTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-6-6,7-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=56.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCCTCCAGGAAGTTCA
R:
CTTGTTACAGGCCAAGGGTCC
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)