HsaINT0132950 @ hg19
Intron Retention
Gene
ENSG00000007038 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:9485]
Coordinates
chr16:2870956-2871718:+
Coord C1 exon
chr16:2870956-2871110
Coord A exon
chr16:2871111-2871366
Coord C2 exon
chr16:2871367-2871718
Length
256 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TCAGCCCCGCTGCTCCCCAGGGT
3' ss Score
5.3
Exon sequences
Seq C1 exon
CACTGCCATCTCCCCACACCCTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATGGTTTGTGCTGGCAATGCCCAAGGCGGGAAGGATGCCTGCTTC
Seq A exon
GTGAGTGTCCTTGCCACCACTCCCAGCCCAGGAAAGCATCCTGTGTCCCTGTGCCTTATTTGACCCTCATGCCAACCCCGGGAGGTGGAGACTGTTGCCCCACTCTGCAGATGCAGAAACGGAGGCTTGGCTGCTGCCAGGGGGAGGAGGAGGATGTGCACCCAGTCTACCCAGCCCCATAGCCCTTCCCACTCTCAGCCCCTCCCCTGCCCCACTCACTCTGCCCCAGGCTGACCTCAGCCCCGCTGCTCCCCAG
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGCCTGTAACAAGAATGGACTGTGGTATCAGATTGGAGTCGTGAGCTGGGGAGTGGGCTGTGGTCGGCCCAATCGGCCCGGTGTCTACACCAATATCAGCCACCACTTTGAGTGGATCCAGAAGCTGATGGCCCAGAGTGGCATGTCCCAGCCAGACCCCTCCTGGCCGCTACTCTTTTTCCCTCTTCTCTGGGCTCTCCCACTCCTGGGGCCGGTCTGAGCCTACCTGAGCCCATGCAGCCTGGGGCCACTGCCAAGTCAGGCCCTGGTTCTCTTCTGTCTTGTTTGGTAATAAACACATTCCAGTTGATGCCTTGCAGGGCATTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-PRSS21:NM_144956:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTCCAGGAAGTTCAGG
R:
GCCATCAGCTTCTGGATCCAC
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)