MmuINT0127504 @ mm10
Intron Retention
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23836785-23837648:-
Coord C1 exon
chr17:23837491-23837648
Coord A exon
chr17:23837149-23837490
Coord C2 exon
chr17:23836785-23837148
Length
342 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TCACCCTTGCTCCTCCTCAGGGT
3' ss Score
9.61
Exon sequences
Seq C1 exon
AGCCTCTGCCACCGCCCTATCACCTTCGAGAAGTACAGGTCAGCATCCTAAACAACAGCAGGTGCCAGGAGCTGTTCGAGATTTTCTCCCTACACCACTTGATCACCAAGGATGTGTTCTGTGCTGGCGCTGAGGATGGGAGCGCAGACACCTGCAGT
Seq A exon
GTGAGTCTGCCTGCCCCTCTGAGGAAGCCCCCCTCTCCTTCACTTCAGGCTGGAGAGCTCGCTCCAGGTCTGCCATCAGCATGCTTTTGCTTCATCTGTGAGAAATCATTTATAGCCTTTAATTACCCAGCCTATAAACCTACTTCCCATTTCCCTCTCATGATAGTTTTCTCCATCATCCCTGAAACCCTCAGAGGTGGAAAACATGGCCCTACTTTCCTGATGAAGAGCCTGAGGCTCTGTGGCTGCCAGGGGAAGACCTCATGAAGCCTTCTACCCCACGGTGTTCCCTTCCCCAACCCCACCCACCAAGTTATCAGGCTCACCCTTGCTCCTCCTCAG
Seq C2 exon
GGTGACTCAGGAGGACCCTTGGTCTGCAACATGGATGGTCTCTGGTATCAGATCGGAATTGTGAGCTGGGGAATAGGCTGTGGGCGACCCAACCTGCCTGGCATCTACACCAACGTCAGCCATTATTACAACTGGATCGAGACCATGATGATCCTCAATGGTGCAGTCAGGCGTGATCTGGCCCTGCCACTGCTGTCTATCACTCTGCTTCAGGCTCCCTGGCTCCTGAGGCCCACCTGAGCTCATGAGGCTGCAGCTTTGCACTCTCTGCAGCCCCAGGACAGTCCATATACTGTAGGGATAGCTTGCTTCACCAGGCTCTTGTCTTGTCTTCTTTGCCAATAAACTCATTGTGCATATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114:ENSMUST00000024926:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGTGTTCTGTGCTGGC
R:
ATATGGACTGTCCTGGGGCTG
Band lengths:
342-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types