BtaINT0007547 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B7M0]
Coordinates
chr25:2267742-2268388:+
Coord C1 exon
chr25:2267742-2267896
Coord A exon
chr25:2267897-2268154
Coord C2 exon
chr25:2268155-2268388
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCACCCACACTGCTTTCCAGGGT
3' ss Score
5.55
Exon sequences
Seq C1 exon
AGCTGCTGCCTCCCTACAATCTCCGGGAAGTGCAGGTCTCCATCATAAACAAATCCAGGTGTTCCTACCTGTTCCAGCAGCCTTTATACCGCAGAAACATCAATCATGGCATGATTTGTGCTGGCTCTGAAGATGGCGATGCTGACAGCTGCAAA
Seq A exon
GTGAGTACCCCTGCCCCACTCCTCCAAATTTTGGTTCTGAGGGCAACCCTCTTGACTCCCTATCAATCCATCCTCAGAATGTATTCATCAGATCACTGTAGACCTCATTATCCAGCCTGTAAAACAAGCTTCCTGTCTCACATTCATTGTACCTCCTTGGATCCTTATGTGAAATCCAGAGGACAGACTCTGCTCTCAGTCTCTCCTGGGGCCCCTCCTGCCCCGCCCTCGGCCTTGCTCACCCACACTGCTTTCCAG
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGTCTGCGAAAAGAATGGGCGGTGGATTCAGATTGGAATCGTGAGCTGGGGAGTGGGCTGTGGTAGGCGCAACCGGCCTGGTGTCTACACCAATGTCAGTCATTACTTCAGCTGGATCCAGTTGCTGACGGCCCGCAGCACACCCAGGCCAGACCCCTCTTGGTTGCTGCTCCCCCTCGCTCTGCTCTGGACTCTCTTACTCCTGCAGATGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038568:ENSBTAT00000052985:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCAGCCTTTATACCGC
R:
AAGAGAGTCCAGAGCAGAGCG
Band lengths:
302-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]