HsaINT0133005 @ hg19
Intron Retention
Gene
ENSG00000215148 | PRSS41
Description
NA
Coordinates
chr16:2854390-2855133:+
Coord C1 exon
chr16:2854390-2854547
Coord A exon
chr16:2854548-2854914
Coord C2 exon
chr16:2854915-2855133
Length
367 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCACCCATGCTGCTCCCCAGGGT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CACCTCTGCCACCTCCTTACAACCTCCGGGAAGCACAGGTCACCATCTTAAACAACACCAGGTGTAATTACCTGTTTGAACAGCCCTCTAGCCGTAGTATGATCTGGGATTCCATGTTTTGTGCTGGTGCTGAGGATGGCAGTGTAGACACCTGCAAA
Seq A exon
GTGAGTGCCTCTACCCCACCAGGGAATCCCACCCTCTCCAGCTCTACACCTGAGAGCAGCTACCATTTCTCCCCCAACCACTCCCAACCCATTGCTTAGATTTCTTAGGAGAAAACCAGTGCAGTCTCAGTTACTGAGCCTACAAAATATGCTTCTCATTTTTCATAAATTCTGCCTACACTGATTAACCCACCAACCCCTGGAGGCTGTTGCCCCACTTTGAAAGTGTAGAAACTGAGACTTGATTCCATGGGAAGGAGTAAGGTTTGCATTCAGTCTGCCTAGCCCCACAGCCCCTCCTGCTCTCATGGCCTCTGCTGCCCCACCCACTCTGCCCCAGCCTGGGCTCACCCATGCTGCTCCCCAG
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGTCTGTGACAAGGATGGACTGTGGTATCAGGTTGGAATCGTGAGCTGGGGAATGGACTGCGGTCAACCCAATCGGCCTGGTGTCTACACCAACATCAGTGTGTACTTCCACTGGATCCGGAGGGTGATGTCCCACAGTACACCCAGGCCAAACCCCTCCCAGCTGTTGCTGCTCCTTGCCCTGCTGTGGGCTCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215148-PRSS41:NM_001135086:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCACCTCCTTACAACCT
R:
CAACAGCTGGGAGGGGTTTG
Band lengths:
343-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)