MmuINT0127457 @ mm9
Intron Retention
Gene
ENSMUSG00000048992 | Prss32
Description
protease, serine, 32 [Source:MGI Symbol;Acc:MGI:1917064]
Coordinates
chr17:23994206-23996743:+
Coord C1 exon
chr17:23994206-23994369
Coord A exon
chr17:23994370-23996046
Coord C2 exon
chr17:23996047-23996743
Length
1677 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TATCCCTTCTTTCTCCTCAGGGT
3' ss Score
12.76
Exon sequences
Seq C1 exon
CGCTCCCACCACCCTTTACCCTGCAGGAGTTGCAGGTGCCTCTCATTGATGCTGAGACCTGCAATACCTACTACCAGGAGAACTCCATTCCCGGCACGGAGCCAGTCATCCTTGAAGGCATGCTGTGTGCTGGTTTCCAGGAAGGCAAGAAGGATGCTTGTAAT
Seq A exon
GTGAGTCAGACACATCCAGACAGTGCCACCTCACCAGCAACCCAGAGGGCAGGCAGGGTGCTCCTCTCCCCTCCACACCAAGAAACTTTCAGGAGGGTTGGGCATCTTAACAACAGTGTGTGTGCATGCGTGGGCACACACACACACACACACACACTTCAAAAAGTTATCCCAGATGTTGTCTCCCTTCCAAATATTTTATAAGCACAATCATAGGGCTGGGAAGATGGTTCATTGTCTGCATCACAAGCATGAGGAACTGAATTTGAATCCTCAGCATTCATATATTAAAAAAAAAAAAGCCAAAAAAACAAAACAAAAAGCCAGATGTGAACAGGTTGTGGTGGCATACACCTTTGATCCCAGCACTCAGGAGGCAGAGGCAGGTGAGTCTCTGAGTTCAAGGCCAGACTGGTCTACAAGTTCCAAGACAGCCAGGGCTACACAGGGAAACCCTGTCTTGGAAAAAAAATAAAAAAGACTTGTACAATAGTACAAGTCTATGATTCCATCATGGCGGTGGGTGGAGTGTCAGAGGCAGGCAGGTTCTAGGGGCTTGCTAGCAGGCCCGTCTAATCAAAACACATGTTCCCAAGTTCAGTGAGAGACTAGGTGGGGAGTGATGAAGGAAGACATGCAATGCTGACCTTTGGCCTCTGCATGCACACACAGGACAGCACACACCTCTCTCTCACATGCCTCACCTCTGTCAAATAAAATAAAATAAATATGACCAGAGAGCTGGGGGTGTGGGTGAGTGGTAGAATGTTTACCAAATGTTTGAAAGGCCTTGGGCTCCACCCTCAGCAGAGTTAGGGAGGGAGAGAGAGGGAGAGGGAGAGAGACAGAGGGAGAGGGAGAGACAGAAAGACAGGGAGAGAGACAAAGACAGACAGACAGACAGACAAGAGAGTGAGAGAAACACAGAGAGAGATACACAGAGAAACAGAGAGATATAGAAACAGACAGAGACACAGAGAAAGAGAGAGACAGAGAGACACACATGCGTGGGCGCGTGCACGCGCACACACACACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGGAAATTGAATTAAATAACTGTGAGCTTACCTCGATCCTGAAAGTTTTCATCCCCCTTCTTGGTGAACGCTAGAAACCTTTGACTACATTTTCAGCAAGAGCAGGCCACATTCAAGCTTGGTTGGTTTTATCCTTTCTTGTTTGCTCTTCTACACACCCTAACTGCCAAATACATCTTGATTGTTTCTTCAAAAAGATGTTTTAGATAAAATCAAACAAGCTGAAGCAAGAAGCACTGTCAGCGGCTCTGAGGTGGCGGCTCTGAGGTGGCGGCTCTGAAGTGGCCTCCTGCTTTTGTCTCTGAACTCACAGCTTCGGCAGAAGTTCATATTTAGACACTAGGTCAAGTGTCTTATCTGCTAGGGATCTCTAGCAGTTCTCAGGAAACCTACAGTTCTCAGATCACCCATCCCTAAAACCTTCTAGAAACTTCCAATTCCTTGATCCTGTCTAGTATGATGAAGAGAGTCTGAAGGGACTGGGTTGGAGAAGTTCAACCTGTGTTTTCTACCTGTGTAATGAAGGCAGTGGGCTCAGACAACCCCAACAACTGTGTATCCCTTCTTTCTCCTCAG
Seq C2 exon
GGTGATTCCGGAGGTCCCCTAGTCTGTGACATTAATGATGTCTGGATCCAGGCAGGGGTGGTGAGTTGGGGATCTGATTGTGCTCTGTTCAAGAGGCCAGGTGTTTACACCAACGTCAGTGTCTACATCTCATGGATTCAGAACACAATGTGGAATTTACCCATGGAAGGAAGAGGTTTTTCCCCCAGCCTTTCAGGGACTCCACTCTTGGGCCTGTTGCTGTTTCTCACATCCCTCAGTAGCGCCTTCTTCCTCCTGGGACCCTAATGCCATCATCTCTGCACCTGTATCTGGAACTGTTCCCCTCGACCGGCTTCCAGGCCAGCACAGCTTCTCTCACAGACGCCCTCCTGTGCCCTCCTTGCACAGCTACCTTCAGACAAGCACCCCATCCATGCTGTGTCCTTTAGGGACCCTCTCCTCACCCCATCAGAAGCCTCCTAACTCCCACATCATTAAGATCCTTGGGACCATCAGCTAAGCTCTGATCTCCTGGCCCCCATGGACCCTGAGCTGCCTCTCACACCCTTGGGGCCTGTGGGTTTCCAGGGGCAGAGGGACTTCATGCCTCTCACTCCTGGGTGGAGCACAGGCCACAGCCATCTTTCAGGGTATCCTTTGGTGGTGTCTGTGACCAGGCAAGTCTTTCTCTAGTGTATCTGTGTCTGAAACAATAAAGACTGGATCGGGCAGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048992-Prss32:NM_027220:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=50.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTTACCCTGCAGGAGTT
R:
TGAAAGGCTGGGGGAAAAACC
Band lengths:
349-2026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: