BtaINT0118735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034368 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr25:2274888-2275410:+
Coord C1 exon
chr25:2274888-2275057
Coord A exon
chr25:2275058-2275254
Coord C2 exon
chr25:2275255-2275410
Length
197 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
3' ss Seq
AGCTCTCCTTTCTCCTGCAGGGT
3' ss Score
11.21
Exon sequences
Seq C1 exon
TGCCACTCCCAGAGTGGCGACCCTTGCAGGGAGTGAGGGTGCCACTGCTGGACGCTCACACCTGTGACCACCTCTACCACCTGGGCACCGACGTGCCCCGGGCAGAACACATAGTGCTGCCGGGGAGCCTGTGCGCTGGCTATGTCGGGGGCCAGAAGGACGCCTGCCAG
Seq A exon
GTGCGAGACGCTGCCCGGAATGTCTGGAGCCCACGCCCCTGTGGCCAGCACCCTACCTCCTTAGGACCTGGGACCCAGGATGTACCACCTCCAGGCTCAGTGTGCTGAACCCCGACCCAGAGGCACCCCTGAGGGATGGCAGCCTGGGACCCAGAGTCCCTGGGGGGCTGGGACCTAAGCTCTCCTTTCTCCTGCAG
Seq C2 exon
GGTGACTCTGGAGGACCCCTGGTCTGCATGAAGTCTGGGCGCTGGATCCTGGTGGGTGTGGTGAGCTGGGGCAAGGGCTGTGCTCTGCCCAACCGTCCAGGGGTCTATACCAATGTGGCCACTTACAGCCCCTGGATTCAGGCTCACCTCAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034368:ENSBTAT00000027425:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGTGACCACCTCTACC
R:
GCTGTAAGTGGCCACATTGGT
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]