MmuINT0127462 @ mm10
Intron Retention
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23833740-23834360:-
Coord C1 exon
chr17:23834191-23834360
Coord A exon
chr17:23834024-23834190
Coord C2 exon
chr17:23833740-23834023
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGCTCACCTCTTTCCCGCAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
TACCACTCCCAAAGGGGAGACCCTTGCAAGGAGTGAGGGTGCCGCTGCTGGACTCCCGAGCCTGTGACCGCCTCTACCACGTGGGTGCCAACGTGCCCCAGGGTGAACGCATAGTGCTACCAGGGAACTTGTGTGCTGGCTACCGCAGAGGCCACAAGGATGCCTGCCAG
Seq A exon
GTGTGTCTGCTAACCCTCTCCCTCTGGAATTGGTTCCCCAGCCACTTACCTCCCTAAAATCCAGGACTGAGGGGGTTGCAGACCCCCAACCAACTACCCCAGGGAACTGGGCTTAGGAAAGTGGCCTTGAAAGAGAGCCATGACCTAAGCTCACCTCTTTCCCGCAG
Seq C2 exon
GGTGACTCTGGAGGACCCCTGACCTGTATGGAGTCTGGCCACTGGGTCCTGGTGGGTGTGGTGAGCTGGGGCAAGGGCTGTGCCCTGCCCAACCGTCCAGGTGTCTATACCAATGTGGCCAAGTATAGTCCCTGGATCCAGGCTCGCCTGAGCCTCTGATGCTGGTGGGTCTGAAAATGTGAATCTGGAGCTTCCTGGTCCATCCCACATTCCCCTCTTTCTCACATGAAGCTGAGATGCTAAGAGTCCATCTGCCTACCCCCTTCCCTCCTCTCCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620:ENSMUST00000115444:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAACGCATAGTGCTACC
R:
TTCAGACCCACCAGCATCAGA
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types