HsaINT1028206 @ hg38
Intron Retention
Gene
ENSG00000103355 | PRSS33
Description
protease, serine 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr16:2783953-2785171:-
Coord C1 exon
chr16:2785002-2785171
Coord A exon
chr16:2784803-2785001
Coord C2 exon
chr16:2783953-2784802
Length
199 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GGCTCCTCTTTCTCCTGCAGGGT
3' ss Score
11.43
Exon sequences
Seq C1 exon
TGCCCCTCCCAGAGTGGCGACCGCTACAAGGAGTAAGGGTGCCGCTGCTGGACTCGCGCACCTGCGACGGCCTCTACCACGTGGGCGCGGACGTGCCCCAGGCTGAGCGCATTGTGCTGCCTGGGAGTCTGTGTGCCGGCTACCCCCAGGGCCACAAGGACGCCTGCCAG
Seq A exon
GTGTGCACCCAGCCTCCCCAGCCTCCGGAGTCCCCTCCCTGTGCCCAGCACCCTCCCTCCCTGAACTCCAGGACCCAGGACATCCCAACTCAGGCTCAGGATCCTGGCCTCCAACCTAGAGGCACCACGCCAGGGGTCTGGAACCCTGAGAACTGAAGTCCTGGGAGGGCTGGGACTTAGGCTCCTCTTTCTCCTGCAG
Seq C2 exon
GGTGATTCTGGGGGACCTCTGACCTGCCTGCAGTCTGGGAGCTGGGTCCTGGTGGGCGTGGTGAGCTGGGGCAAGGGTTGTGCCCTGCCCAACCGTCCAGGGGTCTACACCAGTGTGGCCACATATAGCCCCTGGATTCAGGCTCGCGTCAGCTTCTAATGCTAGCCGGTGAGGCTGACCTGGAGCCAGCTGCTGGGGTCCCTCAGCCTCCTGGTTCATCCAGGCACCTGCCTATACCCCACATCCCTTCTGCCTCGAGGCCAAGATGCCTAAAAAAGCTAAAGGCCACCCCACCCCCCACCCACCACCTCCTGCCTCCTCTCCTCTTTGGGGATCACCAGCTCTGACTCCACCAACCCTCATCCAGGAATCTGCCATGAGTCCCAGGGAGTCACACTCCCCACTCCCTTCCTGGCTTGTATTTACTTTTCTTGGCCCTGGCCAGGGCTGGGCGCAAGGCACGCAGTGATGGGCAAACCAATTGCTGCCCATCTGGCCTGTGTGCCCATCTTTTTCTGGAGAAAGTCAGATTCACAGCATGACAGAGATTTGACACCAGGGAGATCCTCCATAGCTGGCTTTGAGGACACGGGGACCACAGCCATGAGCGGCCTCTAAGAGCTGAGAGACAGCCGGCAGGGAATCGGAACCCTCAGACCCACAGCCGCAAGGCACTGGATTCTGGCAGCACCCTGAAGGAGCTGGGAAGTAAGTTCTTCCCCAGCCTCCAGATAAGAGCCCCGCCGGCCAATCCCTTCATTTCAACCTAAAGAGACCCTAAGCAGAGAACCTAGCTGAGCCACTCCTGACCTACAAAGTTGTGACTTAATAAATGTGTGCTTTAAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103355:ENST00000570702:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=84.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACAAGGAGTAAGGGTGC
R:
TGTAGACCCCTGGACGGTTG
Band lengths:
258-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains