RnoINT0118719 @ rn6
Intron Retention
Gene
ENSRNOG00000029279 | Prss33
Description
serine protease 33 [Source:RGD Symbol;Acc:1583742]
Coordinates
chr10:13173529-13174494:-
Coord C1 exon
chr10:13174325-13174494
Coord A exon
chr10:13174163-13174324
Coord C2 exon
chr10:13173529-13174162
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
AGCTCGCCTTTTTCCTGCAGGGT
3' ss Score
9.19
Exon sequences
Seq C1 exon
TACCACTCCCAAAGGGGAGACCCCTGCAAGGAGTGAGGGTGCCACTGCTGGACTCTCGAGCCTGTGACCGCCTCTACCACATGGGTGCCAACGTGCCCAAGAGTGAGCGCATAGTGCTACCAGGAAACCTGTGTGCTGGCTACCGCAGAGGCCACAAGGATGCCTGCCAG
Seq A exon
GTCTGTCTGCTACCTCAGCCTCTGGAATTGGTTCCCCAACCGCTTACCTCCCTAGACTCCAGGACGGAGGAGTTTGCAGACTCCCAACCTAAAGCCCCAGGGAACTGAACCTGGAAAGTGGCCTTGCAAGCGCCATAACATAAGCTCGCCTTTTTCCTGCAG
Seq C2 exon
GGTGACTCTGGAGGACCCCTGACCTGTATGGAGTCTGGACGCTGGGTCCTGGTGGGTGTGGTGAGCTGGGGTAAGGGCTGTGCCCTGCCCAACCGTCCAGGTGTCTATACCAACGTGGCCAAGTATAGTCCCTGGATCCAGGCTCGCCTGAGCCTCTGATGCTGGTGGGTTTGATGATGTGAATTTAGAGCTTCTTGGCCCATCCCATGCTCCCCTTTCTTATAGGAAAGACGCTCGGAGTCCATCTCCTATCCCCTTCCCTCCTTTCCTCCTGCAGGGCCGTCTTCTGTCACTCAGGGATTTACTGTGCGTGCCCTGCAGTCACACTCTGCCCTCTCCTTTTGGCGAGGATTTGGCTTGTCTGACCTGTATGCCCTTTGTTTCGTGGAGGTAGATTTGAACCCTAACAGGAACTCTCCACCAGGGAGAATCTCCTTTGCAGATTGTGAAGGTGGAGGGGGCCAGGAGCTGACTGACAGCCAATGGGGAGAGAGAAGTCTGTGACCACCAGGAACCTCTTTCTGCCAATACCCCAGAGTCTGGATATAGTCCCCCCCCAACCCTCATCTTCTAAGCCCTCAACAGAGGACACAACTGAGCTGCCCAAACTTTTAATCCATAAATTTTTAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029279:ENSRNOT00000034380:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGAGTGAGCGCATAGTG
R:
CAAACCCACCAGCATCAGAGG
Band lengths:
248-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]