MmuINT0127462 @ mm9
Intron Retention
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine, 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23970328-23971327:-
Coord C1 exon
chr17:23971158-23971327
Coord A exon
chr17:23970991-23971157
Coord C2 exon
chr17:23970328-23970990
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGCTCACCTCTTTCCCGCAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
TACCACTCCCAAAGGGGAGACCCTTGCAAGGAGTGAGGGTGCCGCTGCTGGACTCCCGAGCCTGTGACCGCCTCTACCACGTGGGTGCCAACGTGCCCCAGGGTGAACGCATAGTGCTACCAGGGAACTTGTGTGCTGGCTACCGCAGAGGCCACAAGGATGCCTGCCAG
Seq A exon
GTGTGTCTGCTAACCCTCTCCCTCTGGAATTGGTTCCCCAGCCACTTACCTCCCTAAAATCCAGGACTGAGGGGGTTGCAGACCCCCAACCAACTACCCCAGGGAACTGGGCTTAGGAAAGTGGCCTTGAAAGAGAGCCATGACCTAAGCTCACCTCTTTCCCGCAG
Seq C2 exon
GGTGACTCTGGAGGACCCCTGACCTGTATGGAGTCTGGCCACTGGGTCCTGGTGGGTGTGGTGAGCTGGGGCAAGGGCTGTGCCCTGCCCAACCGTCCAGGTGTCTATACCAATGTGGCCAAGTATAGTCCCTGGATCCAGGCTCGCCTGAGCCTCTGATGCTGGTGGGTCTGAAAATGTGAATCTGGAGCTTCCTGGTCCATCCCACATTCCCCTCTTTCTCACATGAAGCTGAGATGCTAAGAGTCCATCTGCCTACCCCCTTCCCTCCTCTCCTCCTTCAGGCCCATCTTCTATCACTCAGGGATCTTCTGTGAGTCCCCTGCACTTACACTCTGCTCTCTCCTTTTGGCTCATCTGGCCTGTATGCCCTTTGCATCCTGGAGGAAGTCAGACAGATTTAAAGTATAAGAGGAACTCTACACCAAGGAGAATCTCCTTTGCTGACTTTGAAGGTTGAGGGGCCAGACACTGAGGAACCACAAGGCACTGACAGCCAGCAGGGGGAGAGAAGTCTGTGGCCACCAGGAACCTCCAACACCCTGGAGTCTGGATACAATTCCCCCATCTTCTAATCCCTTAGCTTCATGCTGGTAAAGCCCTCAACAGAGGACGCAACTGAGCTGCCTGAGCTTTTGATCCACAGATTTTTCGATTTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620-Prss33:NM_001081399:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAACGCATAGTGCTACC
R:
TTCAGACCCACCAGCATCAGA
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: