GgaINT0144383 @ galGal4
Intron Retention
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:620152-621132:+
Coord C1 exon
chr28:620152-620288
Coord A exon
chr28:620289-620813
Coord C2 exon
chr28:620814-621132
Length
525 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCTGGGCTTCTCTTGCAGGGG
3' ss Score
9.56
Exon sequences
Seq C1 exon
TGGTGAAACCTGAGTTCCTGCAGAAGGCAACGGTAAAGCTGCTGGACCAGGCGCTGTGCTCCAGCCTCTACAGCCATGCCCTCACAGACAGGATGCTGTGTGCTGGTTACCTGGAGGGGAAAATTGACTCCTGCCAG
Seq A exon
GTGAGCGTTGCCCTGGGAAGGTGGCACACATCCCTGCATGAGGCTTCTCCTTGCCGGTATGCACCAAGTAGCACTTCCAGAAGCAGGATTCAGCACCATGCTTGCAGCACCGCACCGAGTTCTGGGGCCATGCGGTGGATTCAGCCATGGGTCAGGGACTGCAAAAGGGAAAAAGTATGTTCTGTAGTGCTCGGAGCAGGGCACTGCTGTTAAGGGGATCCTTCAGCTGTTTAACCGCCTTCCTCTGCTTGCTGACTTGTAGTCACCATAGGACCAAGTTAAAAAAAAAACCATGCAAAGGTTAGCATGGCCACCCTGGTTTGTGTATCATGCAGTGTCCACCCAGCATCTGGCTCTTCAGGGGTGGTTGGGCTTAGCCTTTAAGAGCGGTGGTTTAACAGCTCACTGAACCAGATGTTATGGAGGATGTCCCTGTGCTCTTCTGGCACGTCAAGGGCATAAGGGCTGAACTGGGCTGAAGCAAATCCATGGAGATGGATTTCACCACCTGGGCTTCTCTTGCAG
Seq C2 exon
GGGGACTCCGGTGGGCCGCTGGTTTGTGAAGAACCATCTGGCAAGTTTTTCCTGGCAGGAATCGTGAGCTGGGGAATAGGATGTGCTGAAGCCAGGCGGCCAGGGGTTTACACACGCGTTACCAAACTGAGAGACTGGATCTTGGATGCTATTTCTCCCTTTCCCACCTCCATAACACGCACCGTCCCACTAACACACTCCAGTACTAACAGTAACGTGGTCACACCTGAAGAACTCAGCGCCACCACCAGCACAGCAATCCCCACCTCTTCACCAGCCCTGGCTGCCAGCAAACCAGCAACTGCACCCAGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458:ENSGALT00000000620:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCCATGCCCTCACAGA
R:
GAAGAGGTGGGGATTGCTGTG
Band lengths:
342-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]