BtaINT0150509 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22467614-22468785:-
Coord C1 exon
chr7:22468649-22468785
Coord A exon
chr7:22467933-22468648
Coord C2 exon
chr7:22467614-22467932
Length
716 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTGTGCCTCTGTCTCCCAGGGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
TGGTCAAGCCGGAAATGCTGCAGAAGGCCACTGTGGAGCTGCTGGACCAGGCCCTGTGCACCAGCCTATACGGCCACTCACTCACCGACAGGATGGTGTGTGCTGGCTACCTGGACGGGAAGGTGGATTCCTGCCAG
Seq A exon
GTGAGCCCAGCACCTGGGAAAGGGGCCAGGGGCCCCAGGGGACGCCCCACCAGCCCCTGAGGTCCTGGGAACAGCCCCTCATCCTCCCACCCGAGGCTCCCCTCTCCCAGAAGTAGGGGGGGGTCTTCTGTCTCTGGTCCACCACCAAGACCCTCTGCTGGGTTGGTCACATGGCTGTGGGTTTCCTTTTTAGTTTGTATCTTTGCTGTCCTTTCGAAGGCCTGGTGGGTGGGGAGAGGCTGCTAATGAGCTCTGGTTGCCACGTGAGAGCGGAGACTGGAGAAAACATCGGGAAATAGCAGGAGAGTGCTTGTGTTTAAGGACGTAAGAGTGCACGGTGAGCTGGGTGTGAGGAGGAGGCAGAGGAAAGCAAGACAGGAGGATGCTGTGGCTGCCCGTGAGATGACTGGAGGTTCCTAAGCCACTGGTGATACTATCCAAGATCTATGGGGCTAAGGAGAGGAGGGGATATTGTTTATATGGGCTGGGTTTTTAACTGCCAGTGGTGGAACTGAAAGAGGCCTTAGAGATCCAGAGTCCAAGTGTCCTATTGTATTTTTTGAGGCGGAGACTGAGGTTCTGAGATGTGAGTTTTCAGCTTGTGAGGAAACACATCCCACAACCAGGGCTCCCCCTGTGACCTGTAGCTCTGGATCTGGGGCCAGATGTGGCTGGGGAGCCCCAACCCCTCCTGAGGGTGTGCCTCTGTCTCCCAG
Seq C2 exon
GGTGACTCGGGGGGCCCCCTGGTCTGCGAGGAGTCCTCCGGCAGGTTCTTCCTGGCTGGCATCGTGAGCTGGGGAATCGGCTGTGCGGAAGCCCAGCATCCAGGGGTCTACGCCCGAGTGACCAGTCTGCGGGACTGGATCCTGGAGACCATCGCTTCTGCAAGCAAGCCTCCAGCCCCCACAGTGGCTCTCGCCTCCACCACTCTCAGCACTGCCTGGCCCACCAGCCCCAAGAGCCTGGTGACTGACACCCTCACCAAACCCACACTGGCCCCTAGCACTATGCCTCTAGACTTGGCCACTGCTTCTAAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCACCGACAGGATGGT
R:
TAGAGGCATAGTGCTAGGGGC
Band lengths:
352-1068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]