DreINT0165411 @ danRer10
Intron Retention
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10735096-10735701:+
Coord C1 exon
chr22:10735096-10735238
Coord A exon
chr22:10735239-10735313
Coord C2 exon
chr22:10735314-10735701
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GGTTTTAAATGTGCCTTCAGGGA
3' ss Score
6.99
Exon sequences
Seq C1 exon
CTGAAGTGCCTTCCACATTACAGAAGGCAATCGTGAAGATCATTGACTCGAAAGTCTGCAACAAGTCATCTGTATACAGAGGAGCGCTTACACAAAATATGATGTGTGCTGGTTTTCTTCAAGGCAAGGTGGACTCTTGTCAG
Seq A exon
GTAAGAGTCAGCTAAATTATTCGATTAAAGAGGTTTTCTTAATTGATTGTTCAATGGTTTTAAATGTGCCTTCAG
Seq C2 exon
GGAGACTCTGGAGGCCCTCTGGCATGTGAGGTGGCCGCTGGGCGCTATTTCCTAGCAGGAATAGTGAGCTGGGGAGTGGGATGTGCACAGATCAATAAGCCTGGGGTCTATTCCCGTGTCACCAAGCTCCGCAACTGGATTGTGAGCTACACCAAAACTGCACCAGCATTCCAGGAGAACCCCACTGTCCCTAGTGTCACGACCACCGAGGCTCACCATGTGAAAGCTGCAAATCCTTCCTCTGAGCTCACCACTAGTGACTACATCCCTGCTCTTGGGAACTGCAGTGTCAATTATAACTGTGGCAGAGGCATGTGCATCAGCAAGATAAACCCAGAGTGTGACAGAGTCATCGACTGCCCCAATGAAGCCGATGAGAAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841:ENSDART00000145551:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.9=35.4),PF0005713=Ldl_recept_a=WD(100=28.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGGTGGACTCTTGTCAG
R:
TAGCTCACAATCCAGTTGCGG
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]