RnoINT0153469 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11687957-11689181:-
Coord C1 exon
chr7:11689045-11689181
Coord A exon
chr7:11688276-11689044
Coord C2 exon
chr7:11687957-11688275
Length
769 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AATGTGCCTTTGTTTTCCAGGGT
3' ss Score
10.14
Exon sequences
Seq C1 exon
TGGTGAAGCCAGAGGTCCTTCAGAAAGCCACAGTGGAATTGCTGGACCAGAACCTGTGTTCCAGCCTGTATGGCCACTCGCTCACGGACAGGATGGTGTGTGCCGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
Seq A exon
GTGGGCTGCCAGGGTGAGACCGTTACCCTCTGTCCCCTCCCTCCGGAGAGCAAGCGAGTGGTCACTATGGGAAACACAGCAGTACTCAGGAGGTGGAAACAGGAGAAGAGTTCAGTGTCATCTTGAGCCATATAAGGAGTTTGAGGCCAGCCTGGGCTACGAGAGGCCCTGTCTCAAAAGGAAAACAAGCCAAAAGAATTGTAACTGAGCTGTTGTAGTTGACTATATTTTATTACCATAGAAGTCAGTGCATGGTTTTTCCAGGCGGGGTTTCTCTGTATCGCCCTGGCTTACCCGACTATATCTTTCTGTAAACCAGACTGGCCTTGAACTCACAGAGATCTGCCTGCCTGCCTCTGCCTCCCGAGTGCTGGGGCTGGAGAGATGGCTCAGTGGTTAAGCGTTTTGGGGATCCAATGCCTTCTGGCCTCTGAGGGCACCAGGCGTAAAAGTGGTGCACAGACAATGAACACAGATTAAATATTCACCACATAAATTTCTAAATAAATAATTACACAAAGGTATGCGCCTCCCAGCATGAATGATATCACACTATCCTTGCTATCCTCGCTGTGCCGCTGTGCTCCTATCCAGGCGTTCCCTCTGAGGGGCCACAGAGCTCCTAGTGACACTGTCTCTGCCCACAGTCCTGTCCATGAGCCTATGTGTAACAGACAGGCTGAGGCTTCAGCCTGGGTCCTGGGTTGTCTCTGGCGACTGTAGTCAGAGTCCCCCGCACCCAAGCTGAGAATGTGCCTTTGTTTTCCAG
Seq C2 exon
GGTGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCCGGAAGGTTCTTCCTGGCTGGTGTCGTGAGCTGGGGAATCGGCTGTGCAGAAGCACGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCTCGGCTGACACGCCCGTGGTCCCCACCGAGGCTCCAGCACCCATCACCCCCAGCACTCCCTGGCCTACCAGCCCCGAGAGCCGGGTGCCCAACACCACTGCTAAACCCACCGTTGCCCCCACCCCTGCGCCACTGCACCCCAGCACTGCGGCCAAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTTCCAGCCTGTATGG
R:
GGTGGGTTTAGCAGTGGTGTT
Band lengths:
352-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]