HsaINT1044735 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2410258-2414018:+
Coord C1 exon
chr19:2410258-2410394
Coord A exon
chr19:2410395-2413699
Coord C2 exon
chr19:2413700-2414018
Length
3305 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTGTGTGTTGGTTTCCTAGGGT
3' ss Score
7.58
Exon sequences
Seq C1 exon
TGGTCAAGCCAGAGGTGCTGCAGAAAGCCACTGTGGAGCTGCTGGACCAGGCACTGTGTGCCAGCTTGTACGGCCATTCACTCACTGACAGGATGGTGTGCGCTGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
Seq A exon
GTGAGCCCCCGATGCCCCAGACCCCAGAAAAACACAGAAATAGACACGAGCATGTTCAAATGCTGAGCAATTCACAGATATCTGGATGCCCGCTGTGAGCCCCCAACGCCCCAGACCCCAGAAAAACACAGACACGAGCGTGTTCAAATGCTGGGCGATTCACAGATATCTGGATGCCCGTTCTTGAGGAATTTTAAAGCAGTTGGGATTGAGAGGCAGGTGCTGCTTAGAGGATCTTCCAGAAGCTCTAACCTGACTTCAATCCCTCCTCTGCCCTCCATGGCTCCCTGCTCCCTTCCAGTGGGCCCCAGGTGCGTGCCACAGAGCCTGGGGTCCCTGAGTAATCTCCCTGGCTATGATGGGGTCCCTGTGTAAATCCCCCCCAGCTGCCCTCCAAACCGGGACTTGTGTGGGGACACAGACACTGTTCCCAGCACTGGGCCTGATACAACGTGGCACCCAAGAAACACCTCTTGTATGAATGATGCCAGCACATACCCTGGGCATCAGATTCTCTCCGTCTGTATGGGAAGGGTTGGTCTATGGGAACCCCGTGGACTTTTGCCCCTGGGTGGTCAGCTGGGCCATGAGTGAGCTGCAGGCTCAACTCAAGAAGGTTCCAGGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTATGCGAGGCCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGAGCAACATGGCGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCCTGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTCCTCGGGTGGCTGAGGCAGGAGAATCATCTGAACCTGGGAGCTGGAGGTTGCAGTGAGCTGAGATCACGCCATTGCACTCCAGCCTGGGCGACAAAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAATCAGGGGTCATCCAAAGCTGCTTCTGCTGTATACCTGGAACCTTCTTTTTCTTCTTCTTCTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGAGTCTCCTGCCTCAGCCTCCAGAGTAGCTGTGATTATAGGCATGCGCCACCACACCTAGCTAATTTTTGTATTTTTAATTAAGACACTGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACCTCCCAGTTTCAAGTGGTTCTCATGCCTCAGCCTCCCGAGTAGCTGGAATAACAGGTGCCCACCACCACGCCTGGATAATTTTTATACTTTTAGTAAAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAAATCCTGGCTTCAGGTGATCTGCCCACCTTGTCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCAGGCCCGGCCGACAATTATAATTTTTGTTTTCAAGGTGTCTCATTCTTTCTTCTTTCAGCCACCTGGTCTTGTTTGCAGTGTCCTGTTCTTGTTTCGTGGATACCATTTCTTTCTTTTTCTCTGAGGATCGTAATTTAATCCGTTATGTTTCTTCTATATTCTATATTTGTGGTTAACTGTATTTCAGGCAAACGTAAGTTATTCTGTTGTAACTGAGTGTCTTTATTTCATGGAGATTGGAATCCCTCAACTGGTGCTTAAGAATGAAAAGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGTACTTTGGGAGGCTGAGGCAGCCAGGTCGCTTGAGGCCAGGAGTTTGAGACCAGTTAGGGCAACATAGCAAAACTTTTGTCTCTACAAAAACAAAAACAAAAACAAAAATTAGCTGGGTTTGGTGGTGCATGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGTGGGAGGATTATTTGAGCCCAGGAGGTGGAGGTTGCAGTAAGCCAAGATCACGCCACTGTACTCTAGCCTGAGTGACAGAGTGAGACGCCGTCTCAAACAAAATTGAAAATTTAAAAATGTCGCTCAATTCTTGCCGTGATCTTATATTTGCTATTCACTTTCTCTTGGCGAGGGACATTAACAGTTTGTGTTCTTGGATTCTATGTACCCTTTCAAGGGACCAAAGACCTCCTGGTCTCATTTATCCTTTGTGGTTGCCCAAATCCCTTTTCTACCCCAACCAACCCAGGTCCTCTTGAGAAAGCTTTCTCTTGTGTCTTGAGCTTCTGCACATGGGCTGGGCTGCCACTTCCTCTGTCAGCCTCTCGTGAGTCTTCATGGTTTCTGGTCCACAACCAGGGATCTCTCCTGCCTAATTTTTTTAGCATGGCTGTGGATTCCTGTCTTTCTTGTGCATACCTTTGCTCTTGTTTCTAAGGCCTGGTGGGTGAGGAAAAGATGGGAGAGACTGCTACATGTGCTTAGATTGCCATATTGAAACCAGAATCTGGAGAAAATGCTAGGAACTAATGAGAGGGCTCATGTTTAAGAATGTAAGAGTCGGCCAGGCACGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACTTAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAGAAATTAGCCGGGCGTGGTGATGCGTGCCTATAATCACAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGAGGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAGAGCAAAACTCTATCTCAAAAACAAAAACAAACAAAAAAACGATACACAGAACGTAAGGGTCAGGGTGAACTGGATATGGGAAGGTAAAAAATGGTGAGGCCGGACGAGTGACAGCAGATGAGCACTTTGGGAGCAATGCTGCAGCTACCAGTGAGATATATGGAGGCACCCGCGTGGCAGCCATACTGCCAGCCTAAGCAAGTGGTGACATTATCAAAGATCTACTGAGTTAAGAAGAGGAGGGGATGTTATTTATTTGGGTCACGTTTTGGCCTGCCAGAGGTAGGACTGAAAGACATCTTAGAGATCCTATAGTCCAACTGTCTTGGGTTTTGTTTTTTTTCCTCCACAGAAGAGGAAACAGGTTCTGAGATGTCAATGATCAGCCCCAGGTGCTCTGTGAGCTTGTGTGGAGAGAGGTCCTGGCTGTCCCAGCTCAGAGCTCCTTCTTGGGCCTCGTAGCACTGGTGTCTGGACTGGCTGCTGCCGACCCATCCTGAGGGTGTGTGTTGGTTTCCTAG
Seq C2 exon
GGTGACTCAGGAGGACCCCTGGTCTGCGAGGAGCCCTCTGGCCGGTTCTTTCTGGCTGGCATCGTGAGCTGGGGAATCGGGTGTGCGGAAGCCCGGCGTCCAGGGGTCTATGCCCGAGTCACCAGGCTACGTGACTGGATCCTGGAGGCCACCACCAAAGCCAGCATGCCTCTGGCCCCCACCATGGCTCCTGCCCCTGCCGCCCCCAGCACAGCCTGGCCCACCAGTCCTGAGAGCCCTGTGGTCAGCACCCCCACCAAATCGATGCAGGCCCTCAGTACCGTGCCTCTTGACTGGGTCACCGTTCCTAAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.271
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=43.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains