HsaINT1028228 @ hg38
Intron Retention
Gene
ENSG00000215148 | PRSS41
Description
protease, serine 41 [Source:HGNC Symbol;Acc:HGNC:30715]
Coordinates
chr16:2804389-2805302:+
Coord C1 exon
chr16:2804389-2804546
Coord A exon
chr16:2804547-2804913
Coord C2 exon
chr16:2804914-2805302
Length
367 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCACCCATGCTGCTCCCCAGGGT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CACCTCTGCCACCTCCTTACAACCTCCGGGAAGCACAGGTCACCATCTTAAACAACACCAGGTGTAATTACCTGTTTGAACAGCCCTCTAGCCGTAGTATGATCTGGGATTCCATGTTTTGTGCTGGTGCTGAGGATGGCAGTGTAGACACCTGCAAA
Seq A exon
GTGAGTGCCTCTACCCCACCAGGGAATCCCACCCTCTCCAGCTCTACACCTGAGAGCAGCTACCATTTCTCCCCCAACCACTCCCAACCCATTGCTTAGATTTCTTAGGAGAAAACCAGTGCAGTCTCAGTTACTGAGCCTACAAAATATGCTTCTCATTTTTCATAAATTCTGCCTACACTGATTAACCCACCAACCCCTGGAGGCTGTTGCCCCACTTTGAAAGTGTAGAAACTGAGACTTGATTCCATGGGAAGGAGTAAGGTTTGCATTCAGTCTGCCTAGCCCCACAGCCCCTCCTGCTCTCATGGCCTCTGCTGCCCCACCCACTCTGCCCCAGCCTGGGCTCACCCATGCTGCTCCCCAG
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGTCTGTGACAAGGATGGACTGTGGTATCAGGTTGGAATCGTGAGCTGGGGAATGGACTGCGGTCAACCCAATCGGCCTGGTGTCTACACCAACATCAGTGTGTACTTCCACTGGATCCGGAGGGTGATGTCCCACAGTACACCCAGGCCAAACCCCTCCCAGCTGTTGCTGCTCCTTGCCCTGCTGTGGGCTCCCTGACTCCTGCAGCCATTCTGAGTGCACCAGAAACTGTGAGGCTGCAGTGGGGACCACAGTATTGGCTCACCTCCTCTGGGCTGTGGGCGCTTCAGGGACAGGGTTGGGACTGCCTGCTGGATCAGATTCCGGCCCCTTTTGTCTCGTTTGCTAATAAATACGTGTGCATGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215148:ENST00000399677:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTTTTGTGCTGGTGCT
R:
CCCAGAGGAGGTGAGCCAATA
Band lengths:
344-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains