RnoINT0118765 @ rn6
Intron Retention
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13179781-13180656:-
Coord C1 exon
chr10:13180499-13180656
Coord A exon
chr10:13180162-13180498
Coord C2 exon
chr10:13179781-13180161
Length
337 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CCACCCGTGCTGCTCCTCAGGGT
3' ss Score
7.96
Exon sequences
Seq C1 exon
AGCCCCTGCCACCGCCCTATCACCTCCGAGAAGTACAGGTTACCGTCCTAAACCTCAGCAGATGCCAGGAACTCTTCAGCTTTGCCTCCCGATACCACTTGATCACCAGGGATGTGTTCTGTGCCGGTGCGGAGGATGGGAGCGCCGACACCTGCAGT
Seq A exon
GTGAGTATGCCTGCCCGCTCTGAGGAAGCCTCCCTCTCCCTCACTGCAGGCTGGGAGAGTTCTCTCCAGGTCTGCCATCAGCCTGCCTTTGCTTCATCTGCGAGAAATCACTAATAGCCTTTAATTACCCAGCCTATAAACCTACCTCTCATTTCCCCCTTACGATATTTCTCTCCATCGTCCCTGAGACCCTCAGATGTAGAAACCACGGCCCTGCTTTCCTGATGAAGAGGCAGAGGCTCTGTGCTGCCAGGAGGAGACCTCGAGCAGTCTTCTACCCCACAGCGTTCCCTGTCCCCGTGGCCTCTTCCCCAACCCCACCCGTGCTGCTCCTCAG
Seq C2 exon
GGTGACTCAGGAGGACCTTTGGTCTGCAACATGGATGGTCTGTGGTATCAGATTGGAATCGTGAGCCGGGGAGTAGGCTGTGGGCGGCCCAAACTGCCTGGCATCTACACCAACGTCAGCCATCACTACGACTGGATTAAGACCATGATGATCCTCAATGGTGCAGTCAGGCATGACCTGGCCCTGCCATTGCTGTTCTTCACTCCACTCCAGGCTCCCTGGCTCCTGAGGCCCACCTGAGCCCATGAGGCTGCAGCTTTGGGCCTAAAGCACCATTGCACTCTCTGCAGCCCCAGGACATTGAGTCTAGGGTAGGGATGTCCTGCTTCCCCAAGCTCTTGTCTTGTCTTCTTTGCCAATAAACTCGTTGTGCATATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690:ENSRNOT00000007039:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTATCACCTCCGAGAAGT
R:
TGAAGAACAGCAATGGCAGGG
Band lengths:
347-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]