BtaINT0118719 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015045 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr25:2242556-2243248:-
Coord C1 exon
chr25:2243094-2243248
Coord A exon
chr25:2242796-2243093
Coord C2 exon
chr25:2242556-2242795
Length
298 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TCACCCGTGCTGGTCCCCAGGGT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTCTGCCATCTCCCTACACCCTCCAGGAAGTGCAGGTCGGGATCATAAACACCACCATGTGTAATCACCTGTTCTCAATGCCCGATTTCCGCATTGACATCTGGGGAGACATGATTTGCGCTGGCGAGCCTCAAGGCGGCAAGGATTCCTGCTTT
Seq A exon
GTGAGTGTCCCTCCCGTCCCCAGCTCGCGCATCACCCCAGCCGCCCGCCTCCCTCCCTGGCCAGAAAGCACCCTGCGTCCCTGCCCTCCATTCGGGCCTCGTGCCCACCCTGGGGGGCGGGGGGAGGGACGACTGTTCCACTTTGCAGATGCAGAAGCTGAGGCTTGCTCACTTTGGTGGAGGGGAGGGGTGGGATTTGCACCCTGTCTGCCTGGCCACAGCCCCTCCTACTCTCCCGGCCTCTCTGCTCACCCCTCCCGCGCCACCCCAGGCTGGACTCACCCGTGCTGGTCCCCAG
Seq C2 exon
GGTGACTCAGGTGGGCCCTTGGTCTGTGAAAAGAAAGGGCTGTGGTATCAAGTTGGAGTCGTGAGCTGGGGAGTGGGCTGCGGTAGGCCCAACCGGCCGGGTGTCTACACCAATATCAGTGTGCACTACAAGTGGATCCGAGAGGTTCTGGCCCAAAACAACACTTGCAGGCTGGACTCCTGCCTGATGCTGCTGCTCCTTCCTCTGCTCTGGGCTCTCCCATTCCTACAGCTGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015045:ENSBTAT00000064680:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTACACCCTCCAGGAAG
R:
CCAGAACCTCTCGGATCCACT
Band lengths:
297-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]