MmuINT0127424 @ mm9
Intron Retention
Gene
ENSMUSG00000024116 | Prss21
Description
protease, serine, 21 [Source:MGI Symbol;Acc:MGI:1916698]
Coordinates
chr17:24009338-24010080:+
Coord C1 exon
chr17:24009338-24009492
Coord A exon
chr17:24009493-24009761
Coord C2 exon
chr17:24009762-24010080
Length
269 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTACCTATGTTGCTTCTCAGGGT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTCTGCCATCTCCCAACACTCTCCAGGAAGTGCAGGTAGCTATTATCAACAACAGCATGTGTAACCATATGTACAAAAAGCCAGACTTCCGCACGAACATCTGGGGAGACATGGTTTGCGCTGGCACTCCTGAAGGTGGCAAGGATGCCTGCTTT
Seq A exon
GTAAGTGTCACCTCATACCACCATGCTCTTCTGGGCCCAGTACCCTAGCTCCAACTTCCACCCAACGGAGTTTTCATATAGGGCCTCATTTCATCTCAGGATTTAGACAATGGCCCCACTTTGCAGATGAAGAAATTGAGGGCCTACTGCTGTCAGGGCTAGGAGTAGTATCCTCACCCAGTCTGTCAGCCCCATAGCACCTCCTTCTCCCCTAGCCCCTCTGCTGGTCCTACTTGTCATCTCCCAGGCTTACCTATGTTGCTTCTCAG
Seq C2 exon
GGTGACTCGGGAGGACCCTTGGCCTGCGACCAGGATACGGTGTGGTATCAGGTTGGAGTTGTGAGCTGGGGAATAGGCTGTGGTCGCCCCAATCGCCCTGGAGTCTATACCAACATCAGTCATCACTACAACTGGATCCAGTCAACCATGATCCGCAATGGGCTGCTCAGGCCTGACCCAGTCCCCCTGCTACTGTTTCTCACTCTGGCCTGGGCTTCCTCTTTGCTGAGGCCTGCCTGAGCCCACACGTGTACGTCACACCTGTGAGGTCAGGGTGTGTCTCTTTTGTATCTTGCTTGCTAATAAACCTGTTAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024116-Prss21:NM_020487:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACTCTCCAGGAAGTGC
R:
CCCATTGCGGATCATGGTTGA
Band lengths:
305-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: