DreINT0178106 @ danRer10
Intron Retention
Gene
ENSDARG00000004748 | zgc:100868
Description
zgc:100868 [Source:ZFIN;Acc:ZDB-GENE-040801-33]
Coordinates
chr3:39341695-39344502:-
Coord C1 exon
chr3:39344357-39344502
Coord A exon
chr3:39341990-39344356
Coord C2 exon
chr3:39341695-39341989
Length
2367 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ACTCCCTCTTCATTCGACAGGGT
3' ss Score
8.26
Exon sequences
Seq C1 exon
TCAGCCTACCTTCCCCGGGGACTCTACAAGAAGTGCAAGTGCCGATTGTTGGAAACAGGAAGTGTAATTGTCTTTATGGGGTCTCAAAAATCACAGACAATATGGTGTGTGCTGGACTATTGCAAGGGGGGAAAGACTCCTGTCAG
Seq A exon
GTAATGCTATACTTACCTATACTTTTCCTATACTTATCATTGCGATAAGAAAGATGATAAATAAGAAGAAGGTGTAAAAATATTAACATTTCAAAACATTATTGAGTTCATTGCAAAGCTGATACCTTTTAGATCCTCTCTACTGACACATAGCCAAATATAGTTGGGCTCCCAGTGAAGGGAATGTTCACAGTGCACTTGTATTCAATTTTTGTGTTCACTAACAGATTACTGTTTGGTTTGAATAAGACTTCTGTACTTCAATTACAATGGTTTTGACATTTTAAAATTAAAGTGTATTTTATAAAGTATGAATGGTTACACTTTACAATAAGGTTCATTCGTTAATGCATTTACTAACATGAACTAATCATGAACAACACTTGTACAGCATTTATTAATCATAATTGAACATTTACTAATGCATTATTATCATTCAAGTCCATGCTTGTTAACATTAGTTAATGCACCATGAGTTAACATGAACTAACAATGAACAACTGTATTTTCATTAACAAACGTTTATTAACATGAGTATATACTGTAGTAAATGTATTGTTCAAAGTATGTTCATGTTAGTAAATGCATTACTTAACATTAACTAATGAACCTTATTGTAAAGTGTAACCGTATGAATTAAATACATTTACAGTAAATTTCACCATTAGGGGACATGAAGCATTTTTGCAAGCACTTCTCCAACTGTCAGAGCTTTGTGTTAAACATCTCACTAGGCTGCTGCCATTTTTAAAAAACACAACACTTCTATTGACTGCAACAAAAAAATAAATAAAAAAATTGCTCAGCTTAACTGCTTTGATAGGCACACATCCTTATAAAGAAACAACAGGTAAACATTCACTTGCAACTTTCAATTAAATTCAAGTTAGGGCTAGGGGATTTGGCATAAAATCAAAATCTCGATTAATTTAACATTTTGACTCGATTATGATTAATGAACAATTATTTTAGTTATTTATTTAAATTTTTGCTCTTCATAGTTCACTGACAGGTTTTTTTTACAGTAAATATGCTCACATATTACAAGTGACAGATTTTTGAATATAGGGTGGATAACTTAATTTTAAACTAATTGAAGGAAACACACACTATCTACTGTCTATGATTATTTACTGAACATCAATGTTAAACAATTGAAATTAAAACACAAATTCCCTAATACAAACTTGTCTTTGAAAAAGTAAAAATAAATAGCTTGCACTTTCGGAGACAAAAAAATTAAATAAAATCAACGAGCAGTGTCTAAATAAAATAGCTCTTGTAAATCCTGTTGATAAAAGCAGTGCATTTTTGCGTCTTCTGTAAACAAATATTTTATTGTAAATAATCATTTGAATGTAATGGAAAATATGCTGTCTCAAGGCATATACGGCGCAGCTTCCAATCATTGTCAGTGTAGTGCAAAGTGTGGCTCAAGAGTGGGTCAATCGTCCTACTTGACCAGAGATCAGACGTGACTGCAATGTGACTGCAGAACTATAAATAAAGGCTTAACAGAGTGGGGTCACGTAACTCCACACAGGGTAGGAAAAGTAATAGATAAAATCTTCCTGGAAAATTTTTGATTGATTATAGGTTCTGAATGTTGATTTAGATTAATCACCCAGCCTTAGTTCAAGTTTAATTGTATAGTGCTTTTTACAATAATTATCATTTCAAATCCGCTTCACAAAATGTGCACATCATTACTTTACAGTCAGAATCATAAAGATTAAGAAGTTGTGTCGGGTCGGCATCATCTGTTCATCTGATTGGAGTGGCACTCCACAATCTAGAGGTGGAAATAGAGAATATAGAAAAACAAATAGCAAAGCTGCTGTTCATAATTTATTTGCACAAGAGATATTAATGTAATGTGAAAAAATGCATTTAAAGAGTTCAATTTAACTGTATCATACGTAATGCATTGTCTATATGCTTAACTGAAAATATATATATTTTCATCTAGTTTTAAACTGATATCAGGACAACTATTCCAGAGTTTAGGGGCCAGATATTAAAATGCTCAACCTCCTACAACTTTATTGTGTAATAATCACTTTATAGAAACTACACAGAACCCTCATGAAAGTTCTTAAGATAGACATACTGTACATATGATGAATGTTCATCCAGCTTCCAGCCATACTGGTTTTACATTCGATGACAAGTTTTAGAAAGAAAAAGTACCGCTGAATGCTTCAGGCCATTTCCCTGACAGAACACAGCTGACACTGTAAACTTGCATTGACAAGAATATATTCACACTATTCCTTCATATTATATTTTACAGCTGCAACCTTCAGCTGGAGTAGATCTGCAGAATGGTTTTTACACCTAGTCACTAACTCCCTCTTCATTCGACAG
Seq C2 exon
GGTGACTCTGGTGGTCCAATGGTCAGCAAACAGGGCTCAGTTTGGATCCAGTCTGGAATTGTGAGTTTTGGTACAGGCTGTGCTCAACCAAACTTCCCTGGTGTGTATACCAGGGTGTCTAAATATCAGAGCTGGATCCAGCAGAGAATCACCACCACCCAGCCAGGCTTTGTCATGTACAATTCCAATGGTACTGATGGTGACCTGAGTGTAAACTGCCCTGGTCTCCCCACCATTCCCCCCACCACAGCTTCTACAACACAAACAACTACAATGTCAACTACGACTGTCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004748:ENSDART00000135192:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(29.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(28.0=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]