RnoINT0155078 @ rn6
Intron Retention
Gene
ENSRNOG00000024181 | Tpsab1
Description
tryptase alpha/beta 1 [Source:RGD Symbol;Acc:3066]
Coordinates
chr10:14701253-14701837:-
Coord C1 exon
chr10:14701674-14701837
Coord A exon
chr10:14701603-14701673
Coord C2 exon
chr10:14701253-14701602
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGACCCCTATCCTCTCTAGGGC
3' ss Score
10
Exon sequences
Seq C1 exon
TAAGCCTGCCACCGCCATTTCCTTTGGAGGAGGTGCAAGTTCCCATTGTAGAAAACCGCCTCTGTGACTTGAAGTATCACAAAGGTCTCAACACAGGTGACAACGTCCACATTGTCCGTGACGACATGCTGTGTGCTGGGAATGAAGGACATGACTCCTGCCAG
Seq A exon
GTGAGCGCCTGTCCCCGCCCTTACCACCCCCACCCAGCCTTTATAAGAGTACTGACCCCTATCCTCTCTAG
Seq C2 exon
GGCGACTCCGGAGGACCTCTGGTCTGCAAGGTTGAAGATACCTGGCTGCAGGCAGGTGTTGTGAGCTGGGGTGAGGGCTGCGCACAGCCCAACAGGCCTGGCATCTACACTCGGGTCACCTATTACCTGGACTGGATCTACCGCTATGTCCCCAAGGACTTCTGAGTTGCATCCAGGGTGACCTCTGTTGTTTCCAACATGCTGCTTTCTGCCTCCCTGCTTCCCTGCTCCCCAGCCTGAGCCCCAACTCTGCTCTACCTGAGCCCCTGACCACTTGTGTCCCTCCCGCTCAGGTAGCCACACTGTACAGGCAGCCACTCTGCTATGGCTCAATAAAATGCATTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024181:ENSRNOT00000024767:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGACATGACTCCTGCCA
R:
CCTTGGGGACATAGCGGTAGA
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]