HsaINT0171532 @ hg19
Intron Retention
Gene
ENSG00000095917 | TPSD1
Description
tryptase delta 1 [Source:HGNC Symbol;Acc:14118]
Coordinates
chr16:1308060-1308494:+
Coord C1 exon
chr16:1308060-1308223
Coord A exon
chr16:1308224-1308332
Coord C2 exon
chr16:1308333-1308494
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGACCTCTGACCTTCCCAGGGT
3' ss Score
8.35
Exon sequences
Seq C1 exon
TGCACCTGCCGCCGCCATACCCGCTGAAGGAGGTGGAAGTCCCCGTAGTGGAAAACCACCTTTGCAACGCGGAATATCACACCGGCCTCCATACGGGCCACAGCTTTCAAATCGTCCGCGATGACATGCTGTGTGCGGGGAGCGAAAATCACGACTCCTGCCAG
Seq A exon
GTGGGCCCTCGCGTCCCCCACCCCAATCCCCGGAGCCTGGCCAGCGAGCGCATCCCTCATCCTGACCCCCGAAGCCTGGCCAGCGAGCACTGACCTCTGACCTTCCCAG
Seq C2 exon
GGTGACTCTGGAGGGCCCCTGGTCTGCAAGGTGAATGGCACCTAACTGCAGGCGGGCGTGGTCAGCTGGGAGGAGAGCTGTGCCCAGCCCAACCGGCCTGGCATCTACACCCGTGTCACCTACTACTTGGACTGGATCCACCACTATGTCCCCAAGAAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095917-TPSD1:NM_012217:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(5.9=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACGCGGAATATCACACC
R:
GGGGACATAGTGGTGGATCCA
Band lengths:
255-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)