GgaINT0020674 @ galGal3
Intron Retention
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2310451-2310893:+
Coord C1 exon
chr12:2310451-2310590
Coord A exon
chr12:2310591-2310668
Coord C2 exon
chr12:2310669-2310893
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTACTCTCCTGGCCCTACAGGGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GCACAGCGGATGGCCATGTGCTGAATGTGGCAAAGCTGCCAGTGATGGCACATGCTGAGTGCCAGGCAGCACTGCGTGGGCGCCTGAAGGAGAGCGAGCTGTGCACAGCCCCGCTGCGTGCTGGTGTGGGTGCCTGTGAG
Seq A exon
GTGAGCACGGTCTGAGGAGCCCAGGCAGGCTTGGAGACCCCACAGCAGAGGGGTGACGGTACTCTCCTGGCCCTACAG
Seq C2 exon
GGAGATTATGGGGGGCCCCTGGCCTGTCTGACCGCCGACTGCTGGGTGCTGGAGGGGGTGATCACCCCATCCCGTGTCTGTGCCCGCACCGACCAGCCTGCCCTCTTCATCCGCGTCTCACTCTATGTCGACTGGATCCACAAGGTCATGAGGATGGTGTGAGCTGTGCTGCAGGTGGCACCTCCCCACTCACCCCCCAGCCCCAATAAAGGCAGCGGAGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(24.3=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGAGAGCGAGCTGTG
R:
AGAGTGAGACGCGGATGAAGA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]