DreINT0098266 @ danRer10
Intron Retention
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53393746-53396871:-
Coord C1 exon
chr6:53396732-53396871
Coord A exon
chr6:53394159-53396731
Coord C2 exon
chr6:53393746-53394158
Length
2573 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAT
5' ss Score
7.3
3' ss Seq
TTCTTCTCTTCGGCTCTCAGAGG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GAAAGGGAGATGAAACGGTGCTGAATGTGGCTCAGATGCCGGTGCTCAGCAATAAGGACTGTAACCAGTACTTCAAGGGCCGCGTGCGTGAGAATGAGATGTGCACCATGGCATTCCAGGCTGGAGTGGGAGCCTGTGAG
Seq A exon
GTATATAATGAGGAAGATGCTTTTGTGCTGCATTTTAACAGCAATTAAAGAGATAGTGCGCCCTAAAATGAACATTTACTCACCATTTACTCACAGTAGGTGATCTGCCAGAATGCTAGCATTAGCTTAATTGCTTAGAAATTTTACGACCCTCCCCTGCCGTCCAAAGCCTTGCCTCCTTAGGTCACGCACACTGTTTAGATATAACACTAGATCAAAACTCTATGGACACACGCTCTTCATCAAGCGTAGTTGTTGAGTTGTTGATTTTCTTTTGATCTTTTCCTTAGTGCTGACCACTGAGCCACCGTGCTGCCAGTTTTAAACTCATTTAGTTGAAAATTTGATTAAAAATTGTAATATTAAGAATTTTTGAATGAAAAACTTTAGATTGGAAATTAGATTTATTTTTTTTTAATTAAAGGTCACCCAGGGGCGAAGCAGTGGCGCAGTAGCTCAGATATATTCGCGCATAGGCAACAGAATAGAGAGGGCGGCGTCAGCGACACCTCCATCAGCACCCGCGTGTCCTCAGTTATATCCGCGCAAAGGGCGGCAGAATAGAGAGGGTGGCGTCCACGACACCTCCCTCCCTCAGCACCCGCACGTCCTCAGTTATATCCGCGCATAGGGCGGCAGAATAAAGGTCCGCAACACCTCACTTTATTTTCATAACCGTTCACTTTCGTTTTCACATTGGGGTTGAGGGCGGCGTGATTGTCCTCTGCCTAGAGCGGCAGTTCAGCTTGCTCCAGCCCTGTCTCACACCTTTAAAGGGCCATGAAACCCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTTGGAAAAAGTCAGAAAAGTGGGCGTGTCCACCTCTGTTTAGGGGGGAGTGTCGGAGGAAGAAAAGTGGGATGGTGTGGGAGTGTCCATTTGGGCACGCGCGAGTTTCAGAGTCAAAATTCACACACACAGTAGAAAGTAATGGTGTTTAACCTACATGGACATCTGTAGTCGAATTATTTGCCAGGGAATTCATTCATGCCCCTCGCGACAAACGCGATATTTGATTGGAGGAACTGCTCTAAGCGTGTATTTTTCATGCAATGTTTGATACCGCACGGAGAATGAGAGAGAAAAAAAAACCTCAGCATTTCCCGGAAACTTAGATGCACACGGCAGGTAGTGTCAGAAAGCCGCGTGTGTTATTCCGGTCACTAAATGCGGTAAAAACCCTACACGAGGTTAAAGTTTGGTTGTGGTGCTAACATGTTTACACTCGGTGCAATAGTTTGTTAGATACGAACAAACTAAATAAACAAAGAGCACTGGTCGCTCACTTACCAAATCTGTAGAGACAGGACAATCACCAGCAACTAGAGCCGCATCTTTATTAAAAGGAGACTACAAGCGAATCCGGATCTCAGCGTTTGCAGATGAGAACAGCTCTCAGGTAAACAATAATCCTCCTTAGACATGTAAGTTATTGTTGTCGAGCGTCGTGGGCACTGTTAATCCACACGTGACACTGAGCTCTCACAGAGAGGAAATGAAAACGAAACCTAACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACATGATGTGGCGTCTCTGCCGTCTAAACACTGTGACAGTAATGAATATTAATGAGGTTGCACAATAGTGCGCGCTGATTGGTTTGAACCAAGCCTTACTCATGCATTAATGCAACACACTGTAAGACGTAATAAGACACACTCTGGCACAGACGTCCAGTCTGCACGCTGGAATTTTTTGACGCAGCTTCAAAAATTAGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACGCATATACGACTGTCAACAGCTCAAAAAATGTGTTTTGGTGTTTCATGACCCTTTAAACACCACCATGTGTTCAGTGCATGTCGGCATTGACTCCTGAGGTGCAAGTCATTTATTAAATAAAGAAAAGATTCAGGAAGCTTCATCTACCGCAGTAAATTACGCTTTTACTTTTGATATTTGATGCCAGTTAATCAGGAAATGATGATTTTGTTCTTATTGACTCGTTGGATGGAAACGCTGCTTTATTCGCACCTCTTTTATGCGATTATTCTCGTTTTGTGCATCAATTTAAGTCACATTTTTAATTAAAACATTGCTAATAATTATTGGTTTGCATCTTTCTTCGAAATATCTTCTTTTGTGTTCAGCAAAAAAAAAAAAAAATTACTTTTTTTTTTGACAAATGAAGACAGAATGAGTAAATGATGACCGAAATTTCAGATTTGGGTGAACTATAAGGATTTTTGCAGAACAATTAATTTTAGTAAAACTGAGAATCACAGGTCTAGACATTGCTTAGCTTGCAACAAATGAAGCATTTCAGCTTTAAACGTTTCCTTTGTATGCGTTTGTGCAGCTGCACGTGTTTGAAGTTGTGCTTGTGCAGTAAATGTGAATGTGGATTGTGAAATGAGTAAGTGCAGGTGTGCAGAATAACGTTCTTCTCTTCGGCTCTCAG
Seq C2 exon
AGGGATTACGGAGGCCCGCTGGCCTGTCAGAACAGTGACTGCTGGGTCCTAGAGGGAGTCATTATTCCCATGCGCCGCTGTGGACACGCAGGACAACCCAACATCTTTATCCGCGTCTCGGTTTATGTGGACTGGATAAAGAAAGTCATGGAGATGACCTAACTAACAGAGAAATTCATCTGCTCATATATAAAGTAGACAGAATGTAATATACTTAAAACTTAATATACCTTTTTTATGAATATGCAAGCATTTTGTATCATTTAGGAGATTAATTGACTTAATATTCAAGTTTGCAGTTGTGAAACATATAAATATACATGTGCACATATATGTACACTTAAACTAACACCACAGGTCTGAGTTTTCTTGAATTTTGTAATATTTCTAATGTTAATAAAGTGTTAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308:ENSDART00000162791:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]