HsaINT1023633 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49683947-49684453:-
Coord C1 exon
chr3:49684314-49684453
Coord A exon
chr3:49684190-49684313
Coord C2 exon
chr3:49683947-49684189
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TCAGTTCTCCTACCTGCCAGGGT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GTACGGGTAATGACACAGTCCTAAATGTGGCCTTGCTGAATGTCATCTCCAACCAGGAGTGTAACATCAAGCACCGAGGACGTGTGCGGGAGAGTGAGATGTGCACTGAGGGACTGTTGGCCCCTGTGGGGGCCTGTGAG
Seq A exon
GTTGGTGGCAGGGCCCTGGGCCAGCCCTGGAAGGGTATGGGGGGCTAGAAATGAACTATTTTATCATGAAGCAGGCTAGTCATTGCTGTGGCCCGGGGCCCTCATCAGTTCTCCTACCTGCCAG
Seq C2 exon
GGTGACTACGGGGGCCCACTTGCCTGCTTTACCCACAACTGCTGGGTCCTGGAAGGAATTATAATCCCCAACCGAGTATGCGCAAGGTCCCGCTGGCCAGCTGTCTTCACGCGTGTCTCTGTGTTTGTGGACTGGATTCACAAGGTCATGAGACTGGGTTAGGCCCAGCCTTGATGCCATATGCCTTGGGGAGGACAAAACTTCTTGTCAGACATAAAGCCATGTTTCCTCTTTATGCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(28.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(27.7=83.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGCACTGAGGGACTGT
R:
GTTTTGTCCTCCCCAAGGCAT
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains