BtaINT0095643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51085189-51085659:+
Coord C1 exon
chr22:51085189-51085328
Coord A exon
chr22:51085329-51085420
Coord C2 exon
chr22:51085421-51085659
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CCAGTTCTTGCACCTACCAGGGT
3' ss Score
4.24
Exon sequences
Seq C1 exon
GTACAGGGGATGACACGGTCCTGAACATAGCCCTCCTGAGTGTCATCTCCAACCAGGAATGTAATGTCAAGCACCGAGGACGCGTACGGGAGAGTGAGATGTGTACTGCAGGACTGCTGGCCCCAGTGGGAGCCTGTGAG
Seq A exon
GTCAGTGGCAGGGTCCCTGGCCAGCTTCACCCCCGAGGGGGCTAGTCTCTGCCACGGCCCAGGCCCCCCTTACCAGTTCTTGCACCTACCAG
Seq C2 exon
GGTGACTACGGGGGCCCACTTGCCTGCTTTACTCATGACTGCTGGGTCCTGCAGGGAATTATAATCCCCAACCGAGTGTGCGCACGGCCCCGCTGGCCAGCCATCTTCATGCGTGTCTCTGTGTTTGTGGACTGGATTCACAAGGTCATGAGGCTGGGCTAGTCCCAGCCTCAATCCTGTGTGCCTTGGCAAGCCTGAAGCTTTCTGTCCGACATAAAGCCACCTTTCCTCTTGATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACGGGAGAGTGAGATGT
R:
AGACACGCATGAAGATGGCTG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]