RnoINT0094901 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116861785-116862423:+
Coord C1 exon
chr8:116861785-116861924
Coord A exon
chr8:116861925-116862065
Coord C2 exon
chr8:116862066-116862423
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CCAGTTCTTCTACCTGCTAGGGT
3' ss Score
5.23
Exon sequences
Seq C1 exon
GTACAAGCAATAGCACAGTCCTTCATGTGGCCAAAATGAAGGTCATCTCCAGTCAGGAATGTAATGTGAAGTACCGGAGACGAGTACAAGAGAGTGAGATATGCACCGAGGGGTTGCTGGCCCCTACGGGCGCTTGTGAG
Seq A exon
GTCAGTGGGAGAGCCGCTGGGCCGGCCTGGGAAGGTTTGGGAACTGGAACTATACTACTTGCTTACCAAGGGGGCAGGATGTCAGGGGAGGTGGTCAGTCATTGCCAAGGTCAAGCCTTCACCAGTTCTTCTACCTGCTAG
Seq C2 exon
GGTGACTACGGGGGCCCACTTGCCTGCTATACCCATGACTGCTGGGTCCTACAGGGACTTATCATCCCGAACAGAGTGTGTGCACGGCCTCGCTGGCCAGCTATCTTCACACGTGTGTCTGTGTTTGTGGACTGGATTAACAAGGTCGTGCAGCTGGAGTAGGCCTGCTTTCGATCTCTTAGAGATGACAAGGCTGCTTATCAAACTAAAGCAAACTTTTCTCTATGTCTGTAGAGAGTGCTTCTTCGTCTCTGTTTCTAGAGAATGAGTTGTTGACTCCTTACAAGAGGCTGTGTGGCTTAAGACCAGCACACTCTAGGCTAGGTGTTCTGATCCCGGAACAACTTCAAATGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTCCTTCATGTGGCCAA
R:
ACACGTGTGAAGATAGCTGGC
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]