MmuINT0101361 @ mm9
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107986824-107987358:+
Coord C1 exon
chr9:107986824-107986963
Coord A exon
chr9:107986964-107987104
Coord C2 exon
chr9:107987105-107987358
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CCCGTTTTTCTACCTGCCAGGGT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GTACAAGCAATAACACAGTCCTTCATGTGGCCTCGATGAATGTCATCTCCAACCAGGAATGTAACACGAAGTACCGAGGACACATACAAGAGAGTGAGATATGCACCCAGGGACTGGTGGTCCCTGTGGGGGCTTGTGAG
Seq A exon
GTCAGTGGGAGAGCCCCTGGGCCAGCCTGGGAAGGGCTTGGGAGCTGAAATTATAGTACTTGATTGCCAAGGGGGTGGGATGTCAGGAGAGGGTAGTCACTGCCGAGGTCCAGAGCCTTCACCCGTTTTTCTACCTGCCAG
Seq C2 exon
GGTGACTACGGGGGCCCACTTGCCTGCTATACCCATGACTGCTGGGTCCTACAGGGACTTATCATCCCGAACAGAGTGTGTGCACGGCCCCGCTGGCCAGCTATCTTCACACGGGTGTCTGTGTTCGTGGACTGGATTAACAAGGTCATGCAGCTGGAGTAGGCCTGCTTTTGAGCCCTTAGAGATGTCAAGACTTCTCAAACATAAAGCGGCCTTTTCTCTCTGTCTGTATAGAGTGCTTCTTAGTTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-Mst1:NM_008243:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCATGTGGCCTCGATG
R:
CAGTCCACGAACACAGACACC
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: