MmuINT0101361 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108084493-108085003:+
Coord C1 exon
chr9:108084493-108084632
Coord A exon
chr9:108084633-108084773
Coord C2 exon
chr9:108084774-108085003
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CCCGTTTTTCTACCTGCCAGGGT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GTACAAGCAATAACACAGTCCTTCATGTGGCCTCGATGAATGTCATCTCCAACCAGGAATGTAACACGAAGTACCGAGGACACATACAAGAGAGTGAGATATGCACCCAGGGACTGGTGGTCCCTGTGGGGGCTTGTGAG
Seq A exon
GTCAGTGGGAGAGCCCCTGGGCCAGCCTGGGAAGGGCTTGGGAGCTGAAATTATAGTACTTGATTGCCAAGGGGGTGGGATGTCAGGAGAGGGTAGTCACTGCCGAGGTCCAGAGCCTTCACCCGTTTTTCTACCTGCCAG
Seq C2 exon
GGTGACTACGGGGGCCCACTTGCCTGCTATACCCATGACTGCTGGGTCCTACAGGGACTTATCATCCCGAACAGAGTGTGTGCACGGCCCCGCTGGCCAGCTATCTTCACACGGGTGTCTGTGTTCGTGGACTGGATTAACAAGGTCATGCAGCTGGAGTAGGCCTGCTTTTGAGCCCTTAGAGATGTCAAGACTTCTCAAACATAAAGCGGCCTTTTCTCTCTGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCATGTGGCCTCGATG
R:
CAGTCCACGAACACAGACACC
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types