HsaALTD0005202-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100150355-100150839:-
Coord C1 exon
chr10:100150767-100150839
Coord A exon
chr10:100150628-100150766
Coord C2 exon
chr10:100150355-100150511
Length
139 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CCTCCTCTTTGGTCCCTCAGTGG
3' ss Score
8.51
Exon sequences
Seq C1 exon
GAGTGGCTTCCTGAGGAGTTCCTGGAGAGAATCTCTCAGCTGGACACCCGGTCGCCTGTCACCAAGATCAATG
Seq A exon
GTAAGAGGCACACCACATTGCAGCACTGTCTCCTTTGACCCATCTGAGTGAGAAACCTCCAGGCTGGGGGCAGCTGAACTCAGTCATCATCTCCATTCCCGGACCTCCAGCCTGTGTCCCCCTGCAGCCTGGTCAGAAG
Seq C2 exon
TGGCCGTAGACAGGCTGCCCAGCTTCCTGGCGGCCCCCAATGCTCCCAGGGGCCAGCCGCTGCCCCATCACCAATGCTCCATCCACCTGAACTGTGAAGACACCCTCCTCCTTCATCAGGCCTTTGAAGATGCCATGGATGGCCTGCCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-20-18,21-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTCCTGAGGAGTTCC
R:
TGTGGGAAGGCAGGCCAT
Band lengths:
228-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)