HsaEX0051447 @ hg19
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100146958-100155209:-
Coord C1 exon
chr10:100155148-100155209
Coord A exon
chr10:100152189-100152323
Coord C2 exon
chr10:100146958-100147064
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTGGTGGGCTCTAGACA
3' ss Score
5.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCGCATCCTGGGAGCCCAGCTTCCCCGATATTATGAGGTCCTCACAGCTCCCATTACCAAG
Seq A exon
ACAGTGGCGAAGGTGCAGGTGAACAGTGAAGGCTGTGTTCAAGGAGTTGTGCTGGAAGATGGCACAGAGGTGAGAAGCAAAATGGTGCTGTCCAACACATCACCGCAGATCACCTTCCTGAAGCTGACGCCACAG
Seq C2 exon
TGTTTGATTGCATCGAGGTCTATGCCCCTGGCTTCAAGGACTCTGTGGTTGGCAGAGACATCCTCACACCACCAGATTTGGAGAGAATCTTCGGGCTTCCTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943_MULTIEX1-3/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0126619=DAO=PD(35.0=95.6)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGCTTCCCCGATATTA
R:
CTCCAGGAAGCCCGAAGATTC
Band lengths:
154-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)