MmuEX0038134 @ mm9
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42808573-42810527:-
Coord C1 exon
chr19:42810386-42810527
Coord A exon
chr19:42809913-42810047
Coord C2 exon
chr19:42808573-42808645
Length
135 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTCCTGCTGGGGCAGACT
3' ss Score
2.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG
Seq A exon
ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCACCACAGGTCACCTTCTTAGAGCTGACACCACAG
Seq C2 exon
GAGTGGCTTCCCGGGGCTTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCTGTCACCAAGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCATCACGTGAT
R:
TCCAGCTGGGAGATTCTCTTCA
Band lengths:
181-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: