GgaEX6040667 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21796502-21797022:+
Coord C1 exon
chr6:21796502-21796643
Coord A exon
chr6:21796734-21796868
Coord C2 exon
chr6:21796950-21797022
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTTCCCTCCCCTCTGCCCAGGCC
3' ss Score
8.75
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTATGTGCTGCTGCACCACGTCATGGGTGAGCTGGAGGGGCGGCGCGGTGCCTGGGGCTATGTGGCTGGGGGCATGGGGGCTCTGTCCCAAGCCATTGCCCGTGCAGCAGCCACCTACGGTGCCCACATCTTTACAGAGCAG
Seq A exon
GCCGTGTGCCGCGTGCTGCTGGGATCTGATGGGCAGGCGCAGGGCGTCGTGATGCAGGATGGGACGGAGGTGAGGAGTAAAGTGGTGTTGTCCAACGCCTCCCCCCAGCTCACCTTCCTGGAGCTCACCCCCCAG
Seq C2 exon
GAGCGGCTGCCAGAGGACTTTGTGCGGCGGATCCAGCAGCTCGACACACGTTCCCCTGTCACCAAAATCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'13-16,'13-12,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.080
Domain overlap (PFAM):
C1:
PF0099613=GDI=PU(36.3=68.8)
A:
PF0099613=GDI=FE(48.4=100)
C2:
PF0099613=GDI=PD(12.1=44.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCACCACGTCAT
R:
CGTTGATTTTGGTGACAGGGGA
Band lengths:
210-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]