BtaEX6100132 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19338462-19340676:-
Coord C1 exon
chr26:19340535-19340676
Coord A exon
chr26:19340043-19340177
Coord C2 exon
chr26:19338462-19338534
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACTCCTACTGGCGGCCATAGACA
3' ss Score
4.29
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTATGTGCTACTCCATCACGTGATGGGGAGTCTGGAGGGGGTTCGGGGGGCCTGGGGCTATGTCCAGGGTGGCATGGGTGCCCTCTCTGACGCCATCGCAAGCTCCGCCACCGCTCACGGAGTCAGCATCTTCACCGAAAAG
Seq A exon
ACAGTGGCTAAAGTACAGGTGAGCAGTGGAGGGCGCGTTCAAGGAGTCGTGCTGCAAGATGGCTCGGAGGTGAGGAGCAAAGTGGTGCTGTCCAACGCGTCGCCACAGATCACCTTCCTGAAGTTAACGCCACAG
Seq C2 exon
GAGTGGCTTCCTGAGGAGTTCGTGGCGAGAATCGCCCAGCTGGACACCAAGTCGCCTGTTACCAAGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313-'15-11,'15-9,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTACTCCATCACGTGAT
R:
GGTAACAGGCGACTTGGTGTC
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]