RnoEX0071865 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261967655-261971778:-
Coord C1 exon
chr1:261971681-261971778
Coord A exon
chr1:261969008-261969142
Coord C2 exon
chr1:261967655-261967727
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATCTCGTGCTGGGGCTCCAGACT
3' ss Score
2.36
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCTGGACCAATGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGACGCTGTGATTGGAGCAATGACGAGTCCTCACACTCCGGGGAGTGG
Seq A exon
ACTGTGGCTAAGGTGCAAGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAGTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAG
Seq C2 exon
GAGTGGCTTCCTGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGACCAATGGTTTGAGT
R:
CATTGATCTTGGTAACGGGAGACT
Band lengths:
170-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]