HsaINT0135652 @ hg19
Intron Retention
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100152189-100152840:-
Coord C1 exon
chr10:100152699-100152840
Coord A exon
chr10:100152324-100152698
Coord C2 exon
chr10:100152189-100152323
Length
375 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
CTTGTTCTGGTGGGCTCTAGACA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTATGTGCTGCTGCACCATGTGATGGGGGGCCTGGAGGGAATGCAGGGGGCCTGGGGCTACGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCGATCGCAAGCTCAGCCACCACACATGGAGCAAGCATCTTCACTGAAAAG
Seq A exon
GTGAACGGCCCCTCTACCCCACCCCAATTATTAGTAAGGATCCCAGGACAGAACAAAGTCTCAGATTTGGAAGGTCCCTTGTTTTACCAATGAACAGAGGGGCCATGAGGGGATGGGTTGCAGAATCAAGAGATTAAGGTCATGCAGTCTGTTAGTGGCTAACCACCCCCTTGGAATTCCCTGGTCACTGAACTGAGACTGAGTGTTTCATGGAGAAGCTGAGGCTTCATGGAGAAGCTGCAGAACTTGGTGGGATGGGTTTGGGATGAAGAAGTTGTGAATGCCTAGGAGCAGCACAGACCATGGAAATCCCGGAAGATCTAACATGGATTTCCCTTCCTGCGGTTTCTGGGGCCTTGTTCTGGTGGGCTCTAG
Seq C2 exon
ACAGTGGCGAAGGTGCAGGTGAACAGTGAAGGCTGTGTTCAAGGAGTTGTGCTGGAAGATGGCACAGAGGTGAGAAGCAAAATGGTGCTGTCCAACACATCACCGCAGATCACCTTCCTGAAGCTGACGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-PYROXD2:NM_032709:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(50.0=100)
A:
NA
C2:
PF0126619=DAO=PD(35.0=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCACCATGTGATG
R:
GTGGCGTCAGCTTCAGGAAG
Band lengths:
270-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)